| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1510 |
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| Symbol | |
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| ID | 4581106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1476066 |
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| End bp | 1476608 |
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| Gene Length | 543 bp |
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| Protein Length | 180 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639768825 |
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| Product | conjugal transfer protein precursor |
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| Protein accession | YP_915306 |
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| Protein GI | 119384250 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.309051 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCGTG CCCGCTACAT CATGGTGACG GTTGCGGCGC TTGCCGCCGT CATCGTCGGC
AGCATTCCGA CTGCGCCACG GCTGGTCTGG AACGCCTCGG CCAGCGTGCC GATTGGTTTC
TACACCATCG CGCCGGTGGA CCGGCTCGCG GTGCCAGATC TGGTCGCGGT CATGCCGCCC
GAACCCTTTG CAGGTTTCAT GGTCGCGCGC GGCTACGTCG GTCGCGATGT GCCGATCCTG
AAGCACGTCA TCGGGCTGCC GGGACAACGG ATCTGCCGTG ACGGCGCCGC GATCACCATC
GATGGCAGAC ACCTGGGGGA GGCGCGAGAG CGCGACAGCC AGGGCCGCGA TCTTCCCGTC
TGGCAGGGCT GTCGCACCAT CGCGGAGGGC GAGGTCTTCC TGATGAACCC GGCGGTCGCT
GACAGTTTCG ACGGCCGCTA CTTCGGGCCG TTCCCCACCT CGGCAGTGAT CGGCCGTGCC
AGTCCACTGT TCGCCGATGA GCGCGGCGAT GGTCGCCTCG TCTGGCACGC GCCGGAGCGA
TGA
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| Protein sequence | MTRARYIMVT VAALAAVIVG SIPTAPRLVW NASASVPIGF YTIAPVDRLA VPDLVAVMPP
EPFAGFMVAR GYVGRDVPIL KHVIGLPGQR ICRDGAAITI DGRHLGEARE RDSQGRDLPV
WQGCRTIAEG EVFLMNPAVA DSFDGRYFGP FPTSAVIGRA SPLFADERGD GRLVWHAPER
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