Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1500 |
Symbol | |
ID | 4581096 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 1466069 |
End bp | 1467028 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639768815 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_915296 |
Protein GI | 119384240 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.546441 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGGCAGG CTATGGGACA TGCATTTAGG GAGGCAGATG GTTTCATTCC GGTTTCCAAG GCTTTACGTG ACACCGATCT GTTCCACCCC ACTCAGGGTC GTCAATGTCG AGCCGTCTTC CTCAAACTGC AGGACGGGGT TGACCTCCTT TACTGGGCTG GCCGCTTTCA AAGCGGCATG GAACTGCCGC TGAAAGACGA CAGCGACCGT GTCAGCCTGA GCTTCACAAC AAATCTCAAG GGCACTGCCT CGCGTAACTT CACTGACAAA CCAGACGACC ACCTGCCCGT GCGGTGTAAC ACGGGTTCAA TAGAATATTG CCCGGGGCGC AGCGGCATTT ACCGGCAAAA GGGATCTCTC GAAAACCTGA CGCTCATGAT CGACAATGAC CTGTTCAGCC AATGGGTCGA TGATCGCGAT AACGAGCTCA TTCACCTCGC CAAACATGGT GGTTCAAGCG GGGGATATCT CGGAGGAGAG TTGTCCGCTG TCATTCATCT GATCAACCAA GAGCTTGCGT TTCACGATCA GACCCAACCA CCGCGACGCC ATCCGCTTTG GTACCAGGCA CAAGCGCTAT CGGTCGTAGG ATTATTTCTT GAGTGTCGGA CAGATTTGCG GGTCGAAAGC GTTAACCCCG ATTTGAGACG TAAGCTTTTG CGCGCGAGAG ATTTGCTTCT AGCGGATTTG AGTGCCGCGC CCAGCATTCC GGCACTTGCG TTCGAGGCTG GTCTGAGCGC CCCCTCACTC ACACGCGGAT TCAAAAAACT CTTCGGCACG AGCCCCTATA AACTGTTCCA GCGAGAAAGA ATGCACGCAG CGCACCATCG ACTTTCGGTC GGCCGCGCGT CAGTAACCAT GGTCGCGGCG GATCTCGGCT ATGTCAATCT TAGCCATTTT TCGGCAGCTT TCCGCAAACA GTTTGGTATG TTGCCAAATG AGCTGCACCG AAAAGGATGA
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Protein sequence | MGQAMGHAFR EADGFIPVSK ALRDTDLFHP TQGRQCRAVF LKLQDGVDLL YWAGRFQSGM ELPLKDDSDR VSLSFTTNLK GTASRNFTDK PDDHLPVRCN TGSIEYCPGR SGIYRQKGSL ENLTLMIDND LFSQWVDDRD NELIHLAKHG GSSGGYLGGE LSAVIHLINQ ELAFHDQTQP PRRHPLWYQA QALSVVGLFL ECRTDLRVES VNPDLRRKLL RARDLLLADL SAAPSIPALA FEAGLSAPSL TRGFKKLFGT SPYKLFQRER MHAAHHRLSV GRASVTMVAA DLGYVNLSHF SAAFRKQFGM LPNELHRKG
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