| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1439 |
|---|
| Symbol | |
|---|
| ID | 4580223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1409683 |
|---|
| End bp | 1411917 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639768755 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_915236 |
|---|
| Protein GI | 119384180 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0880018 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTA GACGCATTGA AGTCTTCAAT TTTCGCAAAT TGCGGCGCGC CCGTCTGGAT
ATGTCGGACA AGCAGACGCT GCTCGTCGGG GCCAACAACA GCGGCAAGAC ATCGGCCATG
AAGGCGCTGC GCAAATTCCT TAAGGATCGC GGCGGTATCG ACACGCGTGA TGTAACAGCC
TCAAACTGGG CCGCAATTGA ACAGATCGCG GGAGCCTGGA CACAGGAGGT CGAGGTGGAT
CTCAGCCCGC TCCTGGCCCA GCTTCCGTTC ATTGACGTCT GGCTCCATGC TGACACGTCA
GAACTGCACC ATGTCGCGCA CCTAATCCCA ACACTGACCT GGACTGGTGG CTTGCTGGGC
GTGCGCCTAC GCTTGGAGCC AAAGAGGGGG GCGGACATCA AGGCGCAGTA CCTGGCCGCA
CGAGAGGCCG CTCAGACGCT GCAACCCGGC GGCGCAACGG CCAAAGGGTT CGCGCTTTGG
CCACGTGACT TTCGAGAATT TCTAGACAAG CGCCTAAGGG ACCTATTCGA GCTTAACGCC
CATATTCTGG ATCCCATGAG CTTCACCACG ACAGGGCCGG TTGAGCCGCA GGCCCTGCCG
GCCTTGTCGG AGGGGATCGG TTCGAACCCC TTTGCTGGAC TCATCCACAT TCGTGAGATC
AACGCGCAAC GCGGTTTCGC AGACGCAGGG GACAGTAATG GCGATGACGA TGAACCGACG
AACGCAACTA GCCGCAAGAT TGCCAGCCAG ATTCAGCCCT ATTTCCGTAA ACATATCGAC
CCCGAAAAGG ACCCCACGCC GAACGACGTC AAAGCGCTCG AGGCAATCCA TGATGCCGAA
ACCACCTTTA ATGCCCGGCT CAAGGATGGT TTCGCTGATG CTATAAAGGA ACTGGAAAGT
CTCGGCTATC CCGGTGGGCT GAACAATCCG AAACTCTTCA TAGCCACGCA GATCAAACCC
GTCGATGGGC TCGATCACCC GGCTGCGGTG CAATACGATA TCTCGGGCGA CACATCTGGG
GTGAAGTTGC CTGAAAGCTA CAACGGCCTC GGCTTCCAGA ACCTTATCTC CATGGTGTTT
CAGCTAATGC GTTTCCGGGA TGACTGGATG CAAGTAGGCA AGTTCAAATC GCAGTTAGTG
ACCCCAGACG ACAAGGGTAT CGAACCTCTG CAGCTGGTGC TAATCGAGGA ACCGGAGGCG
CATCTGCATG TTCAGGTACA GCAGGTCTTT ATGGCTAGGG CCCACAAGGT GCTGCGCAAC
CATAAAGATC TGGAGAAGGA GGGCTCGGCC TTTACCACTC AGCTGGTCGT GAGCACCCAT
TCGGGCCATA TTGCACATGC AGCCGCGTTT GAGGAGCTGC GTTACTTCAA GCGGGAGCTG
CCAAGTCAAG GAGTTGTGCC CACGGCCAGT GTGGCGAATA TGACTGGGCT CTTTGGTGCG
GACAACGAAA CCCATCGCTT CGTGACGCGC TATCTGCTGA GCACACATTT TGATCTATTC
TTTGCCGACG CCATCATCGT AATCGAGGGT GCTGCGGAGC GGATTCTGCT GCCGCATCTG
ATCCAACATC ACTACCCCGA TTTGGCTGCA GCCTATCTAT CCTTTTTAGA GCTTGGGGGC
AGTCACGCGC ATAGGCTGCG GCCTCTGATC GAGGCGCTGG AGGTGCCGAC GCTGATCATC
ACCGATCTCG ACGCGGTGGC AGAGGTCGAC AAAGGCGGGA AGATCGTTAA AGAGTCGGTC
CAGCCTTGCT GCGGGGCTGC TCAAACCACA GCCAACCACG TGCTAAAGAC CTGGCTCCCC
AAGCTGGCAG AGATTGATGA GTTGGTAGGC TCTCCCCCCA CGGCTCTATG TCACACGGCC
CCTGACCGCC CTATCGCCGT CAGCTATCAA ACCCCGCAAA AAGTGACACT TGGCTCGGTG
TCCACGAGCG TCACGCCCAG TACCTTCGAG GATGCTCTGG TCCTGACTAA CCCGAAAGCC
GTGACGGACG CCGCAGGAAC AGGGTTCTCC TGCCTCATGA CCCGTGCCTT TGCCAAATCC
ATTGCTGAGG CTCAGGCCCC TGAAGACCTC GCCAAGGCGC TCTTTGAAAG GTTGGCAAAA
AAACCGGAAA AGGCCGCCTT CGCACTGGAT CTTCTGTACA TCAAAGATAT CAAAGTGTTG
CGCGCGCCGC CCTATATCAA CACCGGCCTT ACCTGGCTCG CGGGCCAACT GAAGGGCGTG
GAGGGCGCAG CGTGA
|
|---|
| Protein sequence | MKLRRIEVFN FRKLRRARLD MSDKQTLLVG ANNSGKTSAM KALRKFLKDR GGIDTRDVTA
SNWAAIEQIA GAWTQEVEVD LSPLLAQLPF IDVWLHADTS ELHHVAHLIP TLTWTGGLLG
VRLRLEPKRG ADIKAQYLAA REAAQTLQPG GATAKGFALW PRDFREFLDK RLRDLFELNA
HILDPMSFTT TGPVEPQALP ALSEGIGSNP FAGLIHIREI NAQRGFADAG DSNGDDDEPT
NATSRKIASQ IQPYFRKHID PEKDPTPNDV KALEAIHDAE TTFNARLKDG FADAIKELES
LGYPGGLNNP KLFIATQIKP VDGLDHPAAV QYDISGDTSG VKLPESYNGL GFQNLISMVF
QLMRFRDDWM QVGKFKSQLV TPDDKGIEPL QLVLIEEPEA HLHVQVQQVF MARAHKVLRN
HKDLEKEGSA FTTQLVVSTH SGHIAHAAAF EELRYFKREL PSQGVVPTAS VANMTGLFGA
DNETHRFVTR YLLSTHFDLF FADAIIVIEG AAERILLPHL IQHHYPDLAA AYLSFLELGG
SHAHRLRPLI EALEVPTLII TDLDAVAEVD KGGKIVKESV QPCCGAAQTT ANHVLKTWLP
KLAEIDELVG SPPTALCHTA PDRPIAVSYQ TPQKVTLGSV STSVTPSTFE DALVLTNPKA
VTDAAGTGFS CLMTRAFAKS IAEAQAPEDL AKALFERLAK KPEKAAFALD LLYIKDIKVL
RAPPYINTGL TWLAGQLKGV EGAA
|
|---|
| |