| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0882 |
|---|
| Symbol | |
|---|
| ID | 4579278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 867833 |
|---|
| End bp | 868792 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 639768202 |
|---|
| Product | ribokinase-like domain-containing protein |
|---|
| Protein accession | YP_914689 |
|---|
| Protein GI | 119383633 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1105] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) |
|---|
| TIGRFAM ID | [TIGR03168] hexose kinase, 1-phosphofructokinase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00379836 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGG CACCGATCCT GACCATCACG CTGAACCCGG CGCTGGACGT CACCACCGCC
GCGCGGCAGG TGGTGCCCGA CATCAAGCTG CGCTGCGAGG CGCCGCGCTT CGACCCGGGC
GGCGGCGGCA TCAATGTCAG CCGGGCGATC CGCGCCATGG GTGGCGACAG CACCGCGCTG
GTGGCGCTTG GCGGCGCGAC CGGGCAACGC ATCGCCGGGC TGCTGGAGGA AACCGGCATC
CCGCTCATGA CCCTGCCCGC GCCGGGCGAG ACGCGGCAGT CCCTGACCGT GGACGACCGC
ACCATCCGCC AGCAATACCG TTTCGTCATG CCCGGCCCGG AATGGTCCGC GGCCGATGTC
GAGGCCGCGC TGGACACCGC CGCCGGGGCA GCTGCACCCG GTGCGCTGGT GGTGCTGTCG
GGCTCGAACC CGCCGGGGGT GCCGGTGCGC TTTGCCGCCA TGCTGGCCGA GCGGCTGCGC
GGCACCGGCG CGCGGCTGAT CGTCGACACC TCGGGCAAGG CGCTGGCCGA GGTCGCATCC
GCCACCGACC GCCGGGTCGA GATCCTGCGC ATGGACGACG AAGAGGCCCA GGGGCTGGCC
GGCCGCCCCC TGCCCTATCG CGCCGACACG GCCGCCTTCG CGGCGGGGCT CGTCGCCTCG
GGTGCGGCGC ATGGGGTGAT CGTGGCGCGC GGTCGCGACG GCAATATCAT CGCCACCGAC
CAGGGCATCT GGCATGCCGA GGCCGCGCGG GTGCAGGTGG TCAGCAAGGT CGGCGCCGGC
GACAGTTTCC TGGCCGGCTT CACGCTGGGC CATGCCCGCG GCTGGCCGGT CTGCGATGCG
CTGGGGCTGG CGGCGGCCGC CGCCTCGGCG ACAGTGCAGA CCCCCGCGAC CGAGCTGTGC
CGGGGCGAGG ATGTCGAGCG GCTGTTCGCC GCCCGCATGG TCACGCGGAT GGGCGCCTAG
|
|---|
| Protein sequence | MDQAPILTIT LNPALDVTTA ARQVVPDIKL RCEAPRFDPG GGGINVSRAI RAMGGDSTAL
VALGGATGQR IAGLLEETGI PLMTLPAPGE TRQSLTVDDR TIRQQYRFVM PGPEWSAADV
EAALDTAAGA AAPGALVVLS GSNPPGVPVR FAAMLAERLR GTGARLIVDT SGKALAEVAS
ATDRRVEILR MDDEEAQGLA GRPLPYRADT AAFAAGLVAS GAAHGVIVAR GRDGNIIATD
QGIWHAEAAR VQVVSKVGAG DSFLAGFTLG HARGWPVCDA LGLAAAAASA TVQTPATELC
RGEDVERLFA ARMVTRMGA
|
|---|
| |