Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0617 |
Symbol | |
ID | 4579001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 593194 |
End bp | 593868 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 639767935 |
Product | HAD family hydrolase |
Protein accession | YP_914425 |
Protein GI | 119383369 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.422175 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.344237 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGGAA CGGTGGTCTT CGATCTGGAC GGCACGCTGG CCGACACCTC GGGCGACCTG ATCGCGGCGG CGAATGCCTG CTTTCAGGCG CGCGGCCTGG GCCCGCTGCT GGACCCGGTC GAGGATGCGC TGATCGCCTT TCACGGCGGG CGGGCCATGC TGCGGGCGGG CTATGGCCGC CTGCCCGCCG ACCGGCTGCT GCCGCCCGGC GCCGAGGACG AGGACTATCC CCGCCTGCTG GTGCATTACG GCAAGGCCAT AGCCGTGCAT ACGCGGCTTT ATCCCGGCAC CGAGGCCGCG CTGGAGCAAC TGGCGGCAGC CGGTCACCGG CTTGCGGTCT GCACCAACAA GCCCGCCGCC CTGGCCGAGA CATTGCTGCG CCAACTGGGC ATCCGCGACC GCTTCGCCGC GATGATCGGC GCCGACACGC TGCCGGTGCG CAAGCCCGAT CCCCGCCCCT ATGCCGCCGC GGTCGAGGCA GCGGGCGGGA CGGTGGCGCG ATCCTTCCTG GTCGGCGATA CCGAAACCGA CCGCAAGACC GCAGCCGCCG CCGGTGTGCG GGTGGCGCTG GTCGCCTTCG GCCCCGAGGG AGAGGCGCTG CGCCGCCTGG CGCCCGAGGC GATGCTGGCG CATTTCGACG ACTTGCCGGG CCTGGCCGCC GACTGGCTGG CCTGA
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Protein sequence | MAGTVVFDLD GTLADTSGDL IAAANACFQA RGLGPLLDPV EDALIAFHGG RAMLRAGYGR LPADRLLPPG AEDEDYPRLL VHYGKAIAVH TRLYPGTEAA LEQLAAAGHR LAVCTNKPAA LAETLLRQLG IRDRFAAMIG ADTLPVRKPD PRPYAAAVEA AGGTVARSFL VGDTETDRKT AAAAGVRVAL VAFGPEGEAL RRLAPEAMLA HFDDLPGLAA DWLA
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