| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_3074 |
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| Symbol | dapF |
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| ID | 3725781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 3587753 |
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| End bp | 3588592 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637752685 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_358479 |
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| Protein GI | 77920664 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0000185766 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATTTG CAAAAATGCA CGGAGCCGGC AATGACTACG TTTACGTCAA CTGCTTCGAG
CAAACCATCG ATGACCCCGC AGAAATGGCT CGCAAGGTCA GCAATCGCAA CTTCGGTATC
GGTTCGGATG GTCTGATTCT GATTCTTCCC TCCGAAGTCG CCGATGTGCG CATGCGCATG
TTCAACTCTG ATGGCAGCGA ATCGGAGATG TGCGGCAACG GTATCCGTTG CGTTGCCAAA
TACGCTTATG ACCACGGCCT GGTGGAAAAG AAAGAAATCA CCGCGGAGAC CGGCGCAGGT
ATTCTTACCC TGCAGCTGTT TACCAACGAC CGCGATAAGG TCGAGCGGGT GCGGGTCAAT
ATGGGCAAGC CGCGGTTGAC GCGTGGTGAA ATTCCCATGA CCGGCAGTCC CGAAGAGCAG
GTCATCAATG CGGAGCTGAA AGTTCTCGAC CGCACCTTTC ATATCACCTG CGTTTCCATG
GGCAATCCCC ATTGCATCAT TTTTGTGGAT AATGTGGATG AATTCCCGGT CGCCAAATAC
GGCCCGATCA TCGAAAACGA TCCCATGTTT CCCAATCGCA CCAACGTCGA GTTCATCGAA
ATCGTCTCGA CCACGGAAAT CAAGCAACGC ACCTGGGAAC GCGGCGCCGG CGAGACCTTG
GCCTGCGGTA CCGGTTCCTC GGCGGTCACC GTCGCTTGCG TTCTGAACGA GCGTACCGAG
CGCCGTTTGC TCAATCATCT GCTGGGCGGC GATCTGGAGA TGGAATGGGC CGAAGATGGC
AGCGTCTATA TGACCGGCCC GGCGGTGCAG GTTTTCGAGG GGGTTTTCGA TCCCCAATGA
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| Protein sequence | MKFAKMHGAG NDYVYVNCFE QTIDDPAEMA RKVSNRNFGI GSDGLILILP SEVADVRMRM
FNSDGSESEM CGNGIRCVAK YAYDHGLVEK KEITAETGAG ILTLQLFTND RDKVERVRVN
MGKPRLTRGE IPMTGSPEEQ VINAELKVLD RTFHITCVSM GNPHCIIFVD NVDEFPVAKY
GPIIENDPMF PNRTNVEFIE IVSTTEIKQR TWERGAGETL ACGTGSSAVT VACVLNERTE
RRLLNHLLGG DLEMEWAEDG SVYMTGPAVQ VFEGVFDPQ
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