| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_3018 |
|---|
| Symbol | |
|---|
| ID | 3725725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 3531406 |
|---|
| End bp | 3531921 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637752629 |
|---|
| Product | C4-dicarboxylate transport system, small permease subunit |
|---|
| Protein accession | YP_358423 |
|---|
| Protein GI | 77920608 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.00000295646 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACGAC GCATTCTGGA AAAATTTGAT CGCCTGGTTG GCGGGATCGA AGATTGGGCG
CTGTTTCTGA GCGTGATCCT GGCCTTGTTG GTGGCCCTGG CCAATGTGGC GCTGCGCAAA
TTAACACCTG TCAGCCTCTA CTGGTCCGAC GAAGTGGTGC GCAAAGCCAT CTTTTTCTCG
GCATTTATCG GTTGCAGTGC CGCGGTACGG CGCCGTGCGC TGATTCGCAT TGACGCCCTG
CCGCAGTTGT TGCCGGTATT GAAAAAGCCG CTGACATTAT TGAGCCATCT GGGCGTGCTG
CTTTTTGCAG CGGTGATCAT ACACCTCGGG TGGAAGTTTA CCCTTGTCGC TTTTCACGAT
CCCTATGCCC GGACCTCGAC GCTGCAGATT CGCGAATGGT GGTTCTATGC CGTTTTGCCC
ACCATGGGGG TTTTTCTGGC GGTGCATACC CTGCTGGTGA TGATCGAAGA TTGGTTCGGA
AAACGTGACG GGGCCGATCC CGGTCCGGCC GCTTGA
|
|---|
| Protein sequence | MTRRILEKFD RLVGGIEDWA LFLSVILALL VALANVALRK LTPVSLYWSD EVVRKAIFFS
AFIGCSAAVR RRALIRIDAL PQLLPVLKKP LTLLSHLGVL LFAAVIIHLG WKFTLVAFHD
PYARTSTLQI REWWFYAVLP TMGVFLAVHT LLVMIEDWFG KRDGADPGPA A
|
|---|
| |