| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2538 |
|---|
| Symbol | |
|---|
| ID | 3725240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 2979662 |
|---|
| End bp | 2981608 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637752148 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_357946 |
|---|
| Protein GI | 77920131 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000000000110944 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTTCAG GTTTTGTCGT CTGGGGAAAA CGGCTGCCAG TCCGGAAGCT TATGGAATAC
ATGTCGGCAG GTGGCGGTTT CACCAAAACA GCAGGGCGGA GCACGAGTTG CAGACATATG
TCGTTTAAGA CGAAGGCCTC ACAGCAAGGA ATGGTATGGA TACTGTTGAG CATTTGCATG
CTTCTGGGGC ATGCCTTGCC CGTCCGCGCC AAGGTTCTGA GCCTGGAAAA GAGCAGGCCC
GTGAGGAAGG TCGCTCCTTA TATGGGGATT CTCGAAGATC CCGCGGGGGA CCGGTCTATA
GAGCAACTTG TGAATCCCGT TTCTGCTGCC GCTTTCGCGC CGATACAGGG GGAGATGCTC
AATCTGGGGA TGACCGACGC TGTGTATTGG CTGCGGTTGG AAGTCAACAC CTCAATCGGG
CCCCATGGAG GTGCCGAAGG ATCACCGTTT GTGTGGGTGT TCGATCTGGG GCGGCCCTTT
GTCCGAAATG TGCAGGTCTA TGTCGTATCG CAAGGGCCCG GCGCCGCGGC GAAGATCAAA
AAGATTTCGT CGCAGTCTTC CCAATGCGGC TTTCCGGGCC GCGTATCGAG ACCCGGCTGC
CATTCGGCAT TTTATTTACC CGAACTTACG GCCACCCCCC AAACCTTGTA TATACGCGTG
GTTCCATTGT CCAGCCTGGT GCTGTCGCCC GTGATTACGA CCATGAAGGC TTACCAGGAG
CAGGTGACAC GCAAAATGCT GCGTTTCGGC ATCATTCTGG GGATTTTCCT GGCCCTGTCC
GTTTATAGCC TGATCATGTT CGTTGCATTG CGTGAGCGCA GTTATGCATG GCATTCCCTG
GCGGCTTTAT CGTTTGGGGG ATTTTTTCTT TTTATTCAGC CTTTGAGCTC GGAGTACCTG
CTCGCTTTGC CGGCGGCTAT GGTGCATCGC CTGGCTCTGT TGGCGCTCGG CGGAGCTTTC
TGTTTTTCCG GGTGCTTCGC ACGATGTTTT TTGCACGCTG CCGACCGGAT TGTTGACCGC
TTGTTGCTGT TTTTTATGCT GCAAGGAGGG TGTCTTCTGT TGTTGGCGCT TGGGGGTGCC
TCTCTTATGT TCGAGATGGC CTATATCGGG GTAGCGAGCA TGGCTGTTGC CGTTATGGCG
GGTGCCAGTT TGATAGCCTG GAGCAGAGGC AACCGGCGGG CCCGTTTTAT ATTCATCGCC
AGTGTTGCTG CGGGCGCCAT CGGTGTTGTG CATGTTCTTG TTCTAGGTGG CTGTTTATCC
TGTCGACCCG GGTTTTCCTA CCTGTACGAG GTTGGGGGCA TAGCGGGTAT AGGATTGTTG
GCCTGTGCCT TGGGTGACAG TGTAAAAGCT TTGCAGCACG AGCGCGAAGT TTTGCGGGTG
TCGGAACGGC GACACATGGA ATTGGCGTTT ACCGATGCTT TGACCGGATT GTTCAATATG
CGGTATTTTC GCACTCAACT GGATCTTGCG ATTCAGTGCG CGGAGCCGTT GAACCAATCT
TTTACCCTGA TGATGATGGA TATAGACAAT TTCAAGCTGT TCAACGATCG CTACGGGCAT
CTCCAGGGAG ATCAGGTGTT GCGACAATTG GGGCAAATGA TAGGGTCTGT GATCCGTGAA
AAGGACGTGG CCTGCCGCTA TGGTGGGGAA GAGTTTGCGG TCATTTTGCC GGGCGGTGAT
TTCCAGACGG CCGTCGACAT TTATACGCGC CTCCAGGGCA CCTTGCTGCA ATGGCAGGAA
CATGAAAAGG AAAGCTTGAT TTCATTGGTG ACGTTAAGTG TCGGAGTGGC CGAGTATTTC
CCAGGAGAAC ATGCCGATGA TCTTATCGCG CGGGCCGATA GCGCCATGTA TGAAGCCAAA
GAAGGTGGTC GCGATCAGCT CGTGCTCAGC GAAGCGAGCG ATCCTGGTTA TGACCAGGCT
GCCGGGGAAT GTGCTACGAT TTTCTAG
|
|---|
| Protein sequence | MSSGFVVWGK RLPVRKLMEY MSAGGGFTKT AGRSTSCRHM SFKTKASQQG MVWILLSICM
LLGHALPVRA KVLSLEKSRP VRKVAPYMGI LEDPAGDRSI EQLVNPVSAA AFAPIQGEML
NLGMTDAVYW LRLEVNTSIG PHGGAEGSPF VWVFDLGRPF VRNVQVYVVS QGPGAAAKIK
KISSQSSQCG FPGRVSRPGC HSAFYLPELT ATPQTLYIRV VPLSSLVLSP VITTMKAYQE
QVTRKMLRFG IILGIFLALS VYSLIMFVAL RERSYAWHSL AALSFGGFFL FIQPLSSEYL
LALPAAMVHR LALLALGGAF CFSGCFARCF LHAADRIVDR LLLFFMLQGG CLLLLALGGA
SLMFEMAYIG VASMAVAVMA GASLIAWSRG NRRARFIFIA SVAAGAIGVV HVLVLGGCLS
CRPGFSYLYE VGGIAGIGLL ACALGDSVKA LQHEREVLRV SERRHMELAF TDALTGLFNM
RYFRTQLDLA IQCAEPLNQS FTLMMMDIDN FKLFNDRYGH LQGDQVLRQL GQMIGSVIRE
KDVACRYGGE EFAVILPGGD FQTAVDIYTR LQGTLLQWQE HEKESLISLV TLSVGVAEYF
PGEHADDLIA RADSAMYEAK EGGRDQLVLS EASDPGYDQA AGECATIF
|
|---|
| |