| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2449 |
|---|
| Symbol | |
|---|
| ID | 3725151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 2882947 |
|---|
| End bp | 2884443 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637752060 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_357858 |
|---|
| Protein GI | 77920043 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 71 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGGC TTACCCTCAA GACAAAATTT ATAGTTTCTT TAAGTACCAT TCTGCTTTTA
GGGTTTGTCC TGACCAATCT CAATAATTAC CGGGTGTCGA TCCGCTCGGT GCGTAAAAAC
ATCGTCGAGC ATGCGCTGCC ACTGACCCGT GACAATATCT ATTCCGAGAT TCAATCCGAT
CTGATGCGCC CCATCTTTAT CTCCTCGTTG ATGGCCAACG ACACCTTTCT CAAGGATTGG
GCTCTTGGCG GTGAGCAGGA TGTCGATAAA ATCACCCGCT ATCTGCAGGA GATCGAGGAG
AAGTACGGAT TTTTTTCCAC CTTTTTTGTT TCGGAAAAGA CCGGTTTCTA CTATCACTTC
AACGGCATCC TCAAAAAAAT AAGTCCAGCA GACCCTCACG ACGTGTGGTA TCCCGAATTC
AAGGCTTTGA ATAAGTCTTA CGATCTGGTG GTCGATACCA ACGAGGCGGC CGAAAATGGT
CTGACCATTT TTATCAATCA CCGCCTCAAC GATTATCAGG GCAATCTGCT TGGCGTGACC
GGCGTGGGAT TGAACATGGA GATGGTGGCC AATCTTCTCA AATCCTACCG GCAGCGCTAT
GGGCGGGATA TCTACCTGGT GGATCAAAAC GGCCTTATCA AGGTGCATAA GGACCAGACC
CTGGTGGACC GGGAAAATAT TTCGGACCAG GAAGGACTCA AAGAGATCGC GCGGCAGGCC
CTGGTGGTCA AGCCGGAACC CGACTGTTTT GATTTCTGGC GCGATGGGCG GCACATTCTT
CTGACCTCCC GTTATATTCC CGAATTTGAA TGGTTTTTGT TCGTTGAGCA GGATGAAACG
CAGGCCATCG CCGGAATCCG TCGCAATTTT TACGAAAGCC TTATTTTCGA CCTTCTTATC
ATCGTTGTCG TTCTTGGCAT CACCATCTAT ACCGTCAACC GCTTCCAGAA CACGCTCGAG
GAGATGGCCA CCACCGACAA ATTGACAGGG GCCTGGAACC GGAGGGAGTT CGATCGATGC
TTCGACATGG CCTGTTACCT CAGCAAACGG CAGGGGCGGC CGTTTTCCGT GGTTTTGTTC
GATGTTGATG ATTTCAAAAC CATCAACGAT GAACTTGGGC ATATGGCCGG GGACCAGGTT
CTTAAAGAGG TTGTCCGGCT TGCCGATGAG CACATCCGTC AGGATGATCT GGTGGTGCGT
TGGGGGGGCG ACGAGTTTGT GCTGCTGGTT CACAATGACT TGGCCCATGC CCGGCAGGTG
GCTGAACGGT TGCGGGAGGA AATTTGCAAC CGGGACCTGT TAAACGGAGT TTCCGGCAGC
TGCGACGAGG TTGCGGTCAC CATCAGTTGC GGTGTCGTGA TGTATGACGA GGGTGAGACG
CTGGATCATC TCATGATGCG GGCCGATGCC GCCCTGTACG AGTCCAAAAA ACAGGGGAAG
AATCAGACCG TGACCCTGCC GGCGGTTTCT GTGAAACCGG CCCCCAGTGC TATTTAG
|
|---|
| Protein sequence | MRRLTLKTKF IVSLSTILLL GFVLTNLNNY RVSIRSVRKN IVEHALPLTR DNIYSEIQSD
LMRPIFISSL MANDTFLKDW ALGGEQDVDK ITRYLQEIEE KYGFFSTFFV SEKTGFYYHF
NGILKKISPA DPHDVWYPEF KALNKSYDLV VDTNEAAENG LTIFINHRLN DYQGNLLGVT
GVGLNMEMVA NLLKSYRQRY GRDIYLVDQN GLIKVHKDQT LVDRENISDQ EGLKEIARQA
LVVKPEPDCF DFWRDGRHIL LTSRYIPEFE WFLFVEQDET QAIAGIRRNF YESLIFDLLI
IVVVLGITIY TVNRFQNTLE EMATTDKLTG AWNRREFDRC FDMACYLSKR QGRPFSVVLF
DVDDFKTIND ELGHMAGDQV LKEVVRLADE HIRQDDLVVR WGGDEFVLLV HNDLAHARQV
AERLREEICN RDLLNGVSGS CDEVAVTISC GVVMYDEGET LDHLMMRADA ALYESKKQGK
NQTVTLPAVS VKPAPSAI
|
|---|
| |