Gene Pcal_2099 details

Gene Information

• Locus tag: Pcal_2099
• Symbol: rpl13p
• ID: 4909957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1946604
• End bp: 1947164
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640125852
• Product: 50S ribosomal protein L13P
• Protein accession: YP_001056980
• Protein GI: 126460702
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0102] Ribosomal protein L13
• TIGRFAM ID: [TIGR01077] ribosomal protein L13, archaeal/eukaryotic

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCGTCA AAAAAGTTCT CGACCTTTCG CAAATACCTG AGAAAGGCGA AATAGTAATA 
GACGCCGAGG GACACATAAT GGGCCGTCTT GCGTCATATG TGGCCAAAAT CCTGTTGTCT 
AAGCCTGAGC TTCGGGTGGT GGTGGTGAAC GCGGAGAAAC TTGTTGTGAC GGGGGATAGG 
AAGATGGTAG TGGAGTGGTT CATGCGCAAA ATCAGCGAGT GGAGGACTCA CTACAATCCT 
GAGAAGGCTG GGCCAAAGAT ACCGAGGAGG CCCGATAGGG TATTTAAGAG AGTTGTCAGG 
GGGATGTTGC CCAAGAAAGT TGAGAGTGGG CGTGATGCGT TAAAGAGGCT TAGGGTCTAT 
ATGTCGATCC CCCTGGACTT TATTCAGCGG CGGCGCCTAG TCCTCTATGA GGTTCCTGCC 
GCCAAGCTGA GGGTTAGGCC GCTCATGCAG TTTGTGACAC TTGAAGAGGT GTGGCGCAGT 
ATTGACCCAG CGGCGTGGGA GAAGTGGAAC AAGGCCAAGG AGGTGTGGGC GAAAAAAATA 
AAACAAGCAA CCAGCGGATA G 

 

Protein sequence

MIVKKVLDLS QIPEKGEIVI DAEGHIMGRL ASYVAKILLS KPELRVVVVN AEKLVVTGDR 
KMVVEWFMRK ISEWRTHYNP EKAGPKIPRR PDRVFKRVVR GMLPKKVESG RDALKRLRVY 
MSIPLDFIQR RRLVLYEVPA AKLRVRPLMQ FVTLEEVWRS IDPAAWEKWN KAKEVWAKKI 
KQATSG