| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1971 |
|---|
| Symbol | |
|---|
| ID | 4909963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1833296 |
|---|
| End bp | 1834372 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640125723 |
|---|
| Product | nucleotidyl transferase |
|---|
| Protein accession | YP_001056852 |
|---|
| Protein GI | 126460574 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGAGG CTGGCATTGT CTTGGCTGGT GGCTTTGCGA CGAGGCTTCG CCCGCTTAGC
TATACTAAGC CTAAGCCGCT TTTCCCCGTG TTGGGCCGGC CCGTATTGGA CTGGGTAGTT
GAAAACGTGG CTGAGGTCGC CGAGCCGGTG GTGTCGGCTA GGTATCTCTC TAGCCTCATC
CGCGCCTACG TGGGCTCTAG GTGGGGGAGC AGAGTGAGGA TTGTGGAGGA GGACAGGCCC
CTGGGCGACG GGGGTGCAGT GGTGAATGTG GTTAAGAGCC TGGGGCTGAG GGGCCCCGTA
ATTGTGGCCA ACGGCGACGT GTTTACCGAC CTCCCCGTGA GGGAGGTGTG GGAGTTCCAC
AGGAGGAAGG GGGCCGCGGC CACTCTAGCG CTCATAGAGG TCCCGCCTGA GGACGTGAGC
AAGTTCGGCA TCGCCGTCAT CGACGAGGAT GGGAGAGTTA AGAGGTTTGT GGAAAAGCCC
AGGGAGCCCG TGGGTAGTAA TTTGGCAAAT GCGGGGGTCT ACGTATTTAG CGAGGAGGCC
TTGGCGGCCT TTCCGGAAGC GAATGGAGAG GTCAAGATTG CGAAGCACAT AATTCCCGAG
CTTTTGAAGA AGTTCGACGT ATATGCATAT GTGCACAGGG GGCTGTGGTT CGACATTGGG
ACACACCAGG ACTACCTCAA GGCCAACTTC GCGGCCCTTG ACAAATGTGG AGAGTGTAGG
CCAGAGATTA GGGGGGTGAA GATAATTCCC CCCGTGTACA TAGGGCCCGA CGCCGTGGTT
GAGCCGGGCA GCGTGTTGGG GCCCTACGTC GTAGTGGGAG GGCGGAGCAA GATTGGGCCT
CACGTCCGCA TTAGAGAGAG CGTGTTGATG GACGGCGTGG TGGTAGAGGC CGGGTCGCAC
ATAGTCCGTA GCATAATAGG CGAGGGGGCG GCCCTGGGGA AGTGGGTCAG AGTTGTGGAA
GCCGTGGTGG CCGACGGCGT GTTTATAAAA GACGAAGTGA CTGTGGGCAG GGGCGCCTCC
ATAGGCCCCA ACAGAGAAGT GGAGGCCGAC GTAAAAGAGG GGGAGGTCCT CCCCTGA
|
|---|
| Protein sequence | MAEAGIVLAG GFATRLRPLS YTKPKPLFPV LGRPVLDWVV ENVAEVAEPV VSARYLSSLI
RAYVGSRWGS RVRIVEEDRP LGDGGAVVNV VKSLGLRGPV IVANGDVFTD LPVREVWEFH
RRKGAAATLA LIEVPPEDVS KFGIAVIDED GRVKRFVEKP REPVGSNLAN AGVYVFSEEA
LAAFPEANGE VKIAKHIIPE LLKKFDVYAY VHRGLWFDIG THQDYLKANF AALDKCGECR
PEIRGVKIIP PVYIGPDAVV EPGSVLGPYV VVGGRSKIGP HVRIRESVLM DGVVVEAGSH
IVRSIIGEGA ALGKWVRVVE AVVADGVFIK DEVTVGRGAS IGPNREVEAD VKEGEVLP
|
|---|
| |