Gene Pcal_1929 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1929 
Symbol 
ID4908311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1796959 
End bp1797441 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content55% 
IMG OID640125680 
Producthypothetical protein 
Protein accessionYP_001056811 
Protein GI126460533 
COG category[C] Energy production and conversion 
COG ID[COG4314] Predicted lipoprotein involved in nitrous oxide reduction 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGGTA GTAGAGGAGT AAGTCGCCGG GCATTTCTCA TGGCACTCGG GGCCTCTCTT 
TTGGTGGCTG GGGGTGCGGC ATATTTGCTG ACAAGGCCTA GGCAGAGCGG TGTGCCAGAC
GTGAGACTCG GCGTGGATAA ATGCGCCTAC TGTGGCATGG TTATTGTAGA TAGGAGGTTC
GCCGCGGTCT ACAACGAGGA CGGAAAGTGG GTCTACTTCG ACGACGTGAT ATGCCTCCTC
CTCTACCTAA AGGCTGTGGA CAAGCTAGGC GATGTGGGGA AGGCGTATGT CCACGACTAT
TCCACAGGAA GACTTATAAG GGCGGGCGAG GCCTATTATG TTGTGAACAA GAGAATTCCC
ACCCCCATGG GCTCTGGCAT CGCCGCCTTT GAGAATAGGG AGGAGGCCGC AAAGTTTGGG
CAAGTGTATA CGATAGATGA GCTTGTGGGC AAGTTAGAGG AAATAGCGCC GTTGGGGACA
TGA
 
Protein sequence
MAGSRGVSRR AFLMALGASL LVAGGAAYLL TRPRQSGVPD VRLGVDKCAY CGMVIVDRRF 
AAVYNEDGKW VYFDDVICLL LYLKAVDKLG DVGKAYVHDY STGRLIRAGE AYYVVNKRIP
TPMGSGIAAF ENREEAAKFG QVYTIDELVG KLEEIAPLGT