Gene Pcal_1705 details

Gene Information

• Locus tag: Pcal_1705
• Symbol: rpl6p
• ID: 4908140
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: -
• Start bp: 1587853
• End bp: 1588443
• Gene Length: 591 bp
• Protein Length: 196 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 640125452
• Product: 50S ribosomal protein L6P
• Protein accession: YP_001056588
• Protein GI: 126460310
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03653] archaeal ribosomal protein L6P

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.0210193
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCACGTCG TGTACGCAGT TGAGGAGGTG CCAATACCCG ACGGCGTCAA GGTCGCCATA 
GAGAAGACCG GGCCCTTCGA CTACGTTGTC AAAGTCAAGG GCCCTCTTGG AGAGCTCGTC 
AAGGAGTTTA AAAACACCCC AGTCATAATG TCGCTGAGCG ACGGCAAAGT GGTGCTCGAA 
GTACTAAACG CGAAGAAGAG AGAGTACGCC CTGCTTGGGA CTTACAAGGG CATATTGAAA 
AACATGTTCC TAGGAGTCAC AAAGGGGTGG CGCTACAAGC TCAAAGTCAT ATACACCCAC 
TTCCCCATGC TTGTAAAAGT GCAAGGGAAC CAGCTGACTA TAGAGAACTT CTTGGGGAGA 
AAATCCAAGA TAGTGTTAGA GATACCCAAG GGCGTCAAGG TGGAGGTAAA GGGCAAAGAG 
GACATAGTGG TGGAGGGCAT CGATAGAGAG CTTGTCAGCC AATTCGCCGC AGCCATCCAA 
GCCGCCACGG AGCTGAGGGG CGAGGAAAAG CCGTCGCCTC ACGGACGCGA GGGCGGCCTA 
GGCGTAGTAG ATGGGATATA CGTCGTCGGC TACGAACACG TCAAAGCCTA G 

 

Protein sequence

MHVVYAVEEV PIPDGVKVAI EKTGPFDYVV KVKGPLGELV KEFKNTPVIM SLSDGKVVLE 
VLNAKKREYA LLGTYKGILK NMFLGVTKGW RYKLKVIYTH FPMLVKVQGN QLTIENFLGR 
KSKIVLEIPK GVKVEVKGKE DIVVEGIDRE LVSQFAAAIQ AATELRGEEK PSPHGREGGL 
GVVDGIYVVG YEHVKA