Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1683 |
Symbol | |
ID | 4908690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 1568511 |
End bp | 1569173 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640125430 |
Product | hypothetical protein |
Protein accession | YP_001056566 |
Protein GI | 126460288 |
COG category | [S] Function unknown |
COG ID | [COG2860] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000472975 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCACGCCG AGGCGGTCCT AGAGGTATTG AACTACGTCG GAATTGTCGC CTTCGCCGTA TCTGGGGCAT TAAAGGCAGG GGAGAAGAAC ATGGACTTGC TGGGAGTGAT AACCCTCGGC TTCTCCACAG CTTTGGCCGG CGGAATAATA AGAGACGTGC TGTTGGGCAG AGTGCCCCCG GTAAACCTAA TCTATTTACC GTATTCCCTG ACGGCTGTGG CCGCCTCCGT GGCCACCTTC ATACTATACC CACGCGTCAG ATCATACAAA GACTTATTCC TCTACCCGGA CGCAGTTGGC CTCGGCGCAT TCTCTGCGAT AGGCGCAGAC GTAGCGGCTA GCTTCGCCCT GAAACACGGC TACTCCGCGT CGGAGAGCTG GTTTTTAGTC GCGGCGCTGG CCTCAATCAC GGCTGCGGGC GGCGGAGTAG TGCGGGACGT CCTCGCTGGC GAAATTCCAC AGATCTTGAG AAGAGAGATC TACGCAACGG CGGCCGCCGT TGGCGGCATT ATATATTTGG CCACGCTTCC CGCGGGCCGT GAGGCCGCCA TGTTTACAAC AATTGCGTCA GTCACAGCCA TTAGGATTGT ATCGCTATGG CGTCGTTGGG AACTGCCAAA GATTACGACA CCTGACGCCC AGCCTCTTGT GCACGACGCA TAA
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Protein sequence | MHAEAVLEVL NYVGIVAFAV SGALKAGEKN MDLLGVITLG FSTALAGGII RDVLLGRVPP VNLIYLPYSL TAVAASVATF ILYPRVRSYK DLFLYPDAVG LGAFSAIGAD VAASFALKHG YSASESWFLV AALASITAAG GGVVRDVLAG EIPQILRREI YATAAAVGGI IYLATLPAGR EAAMFTTIAS VTAIRIVSLW RRWELPKITT PDAQPLVHDA
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