Gene Pcal_1561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1561 
Symbol 
ID4909058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1452390 
End bp1453001 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content51% 
IMG OID640125309 
ProductABC transporter related 
Protein accessionYP_001056445 
Protein GI126460167 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1122] ABC-type cobalt transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTTG TTTTGAGAGA TGTATGGGTT AAGCTTGGAG GTAGAGAGGT TATAAGAGGC 
GCAACTGCCG AGTTTAATGG ACAGAACCAA CTCGTGGGGC CAAACGGCTC TGGCAAAACT 
GTTTTGTTAT ACACAATCGC CGGTTTAGTA AAGCCTTTTA GGGGCGAGGT TAAAGTATCG 
GGCACTGCGT CTATAATGTT TCAAGATCCA GACCTCCACT TTTTCGCAGG CACTGTGCTA 
GAAAACGCGC TTGTGTGGAG TGGGGGGAGG TCCACTGAGG CTGAGGTGGC CAAGTTGGCA 
AACGACATAG GAATTGGCGA CGTCTTACAC AGATCGCCCT TTGAGCTAAA CTGGGGGCAT 
AGGAAGCTTG CGGCGTTTCT CTGCGCCCTT GCAAAAAAGC CAGACGTCTT ATTGCTTGAT 
GAGCCTCTGG AGGGGCTCTC GCCGAGGTTT CACATACGTG TTTTAACCGT AGCGGCCGAA 
CACTCAAAAA CTGTGATTAT CGCAACACAT ATGGTCGTCG GCAGGTGGAA GCTCTACTTC 
GTAGAAGATG GACGACTATA CGTCGGCGAA GAGGCCAAGG CCAAGGCGGT GGAACACGGC 
TATTTGCAAT GA
 
Protein sequence
MAVVLRDVWV KLGGREVIRG ATAEFNGQNQ LVGPNGSGKT VLLYTIAGLV KPFRGEVKVS 
GTASIMFQDP DLHFFAGTVL ENALVWSGGR STEAEVAKLA NDIGIGDVLH RSPFELNWGH 
RKLAAFLCAL AKKPDVLLLD EPLEGLSPRF HIRVLTVAAE HSKTVIIATH MVVGRWKLYF 
VEDGRLYVGE EAKAKAVEHG YLQ