Gene Pcal_1358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1358 
Symbol 
ID4909483 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1273194 
End bp1274291 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content56% 
IMG OID640125110 
ProductABC transporter related 
Protein accessionYP_001056246 
Protein GI126459968 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3839] ABC-type sugar transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.181944 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTTCG TCGTATTGGA CAGGGTCACC AAGCGGTTTG GAAACGTCGT GGCAGTGGAC 
AACGTCTCGC TTGAGGTGAA GAAGGGGGAG TTCGTCGTAT TTCTGGGGCC CTCTGGGTGT 
GGGAAAACGA CTACGCTCAG AATTATAGCT GGCCTAGAGA GGCCGACTAG CGGCCGAGTC 
TACATCGACG GTGTGGATGT CACCGATTTA GAGCCGGGAG AACGCGATGT GGCTATGGTC 
TTCCAAGACT ACGCCATTTA CCCCCACATG ACGGTTTTTC AGAACATAGC CTTCCCCCTC 
GAGGTTAATA AGAAGAAGCT CCGCCTCACG CCTAGGGACA TTAGAGAGCG GGTGGAGCGG 
GTGGCCAAGA TGTTGCAGAT TGACCATCTG CTGAATAGGA AGGCTTCCCA GCTGAGCGGG 
GGGCAACAGC AGAGGGTGGC GCTGGCGAGG GCCTTGGTTA GAGAGCCCAA GGTGTGGCTT 
ATGGACGAGC CTCTCTCAAA CCTAGACGCG TTGATTAGGC TCCAGGTCAG GGCTGAGTTA 
AAGAGGCTAC AGAGGGACCT TGGCATTACC ACTATCTACG TCACTCACGA CCAAGTGGAG 
GCCTTGACTC TCGCCGACAG AATCGCGGTG ATGAACGCTG GGCGAGTGGT GCAGTACGCC 
CCGCCGGGGG AGATTTACGA CGAGCCTCAG CACATGTTTG TGGCAACTTT CGTGGGCAAC 
CCGCCGATGA ACGTTCTCAA GTGCACTCCC GCCGGCGAAG TGCTTAAGTG CCCTGGCTTT 
GAGCTAAGGA ACCCCGGCGT GAGCCAGCCG GTCTACTTCG GCATTCGTCC GGAGTACATA 
GAGTGGTCCC CCAAGCATGT GGAGGGCGCG GTCAAGGGCG TGGTGTATGT AGTAGAGCCC 
ATAGGCTCAG AGTACATCAT AAATGTGACT CTGGGGAACA CCTTGATAAA GGTAAAGACG 
TTTAGAGAGG TCGCGCTGAG GCCAGGCGAT GAGATATACC TAAGGTTTAA CTTAAGAAAG 
GCCAAGATCT TTGACGAAGC CACTGGTAAG CTTCTCTTGT CCGCGGTTGA GTCGGCTACA 
CTCGGTGGCG CTTTGTGA
 
Protein sequence
MTFVVLDRVT KRFGNVVAVD NVSLEVKKGE FVVFLGPSGC GKTTTLRIIA GLERPTSGRV 
YIDGVDVTDL EPGERDVAMV FQDYAIYPHM TVFQNIAFPL EVNKKKLRLT PRDIRERVER 
VAKMLQIDHL LNRKASQLSG GQQQRVALAR ALVREPKVWL MDEPLSNLDA LIRLQVRAEL 
KRLQRDLGIT TIYVTHDQVE ALTLADRIAV MNAGRVVQYA PPGEIYDEPQ HMFVATFVGN 
PPMNVLKCTP AGEVLKCPGF ELRNPGVSQP VYFGIRPEYI EWSPKHVEGA VKGVVYVVEP 
IGSEYIINVT LGNTLIKVKT FREVALRPGD EIYLRFNLRK AKIFDEATGK LLLSAVESAT 
LGGAL