Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1268 |
Symbol | |
ID | 4909766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 1177484 |
End bp | 1178950 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640125021 |
Product | CRISPR-associated helicase Cas3 family protein protein |
Protein accession | YP_001056158 |
Protein GI | 126459880 |
COG category | [R] General function prediction only |
COG ID | [COG1203] Predicted helicases |
TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0968245 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACGCG CTATTTTGAG GGCTGTTGAA CTAGTGAGGC GTGGTGTTGA CAAGTTGGTG TTGGAGTTGC CCACTGGCTA TGGCAAGACG GAGGCAGCGC CTGTGATTTA CAAGGCGTTT AGGGAGCGGG GGGTGTGTTG GAAGGCTATC CACGTCTTTC CCCTGAGGAC GCTTTTGCAC AAGACGCTTG AGAAGTACTC CAAGAAATAC GGCGACATCT CTTTCACGTA TCAGGACGGC GACATCTCCC TCGTCAAGAG CGGGTACGTT AAGGACCCCT ACTTCACCGG CGAGTATGTC CTCACTACGA TTGATTCATT TGTTCACAAC CTCTTCAAGG CGCCGGTGGC CGAGTTGCCC CGGCTGTTGC GGGGGAGGTC GGTGCACTAC CACGTCCCCT TTGCCTACAT CTATCCGGCT TGCGTATTTT TTGACGAGGC GCATATTATG GCTGAGGGGG GACAGAAGGC GGCCGCGGCG TTGAGGGTCA CTGTGGAGGC CCTCGTCGAC GCCGAGATTC CAGTGGTTGT AATGTCTGCC ACGCTGGGGG AGTGGAAGTG GGAGGTTTTC AAGGGCTTTG AGTTTGTGAC GCTGGGGCCT AAGGGCACCG CTGGCTACGA CCCAGATTTT GAGGCCGAGC TTGAGGAGAC AAGGTATGTG ACAAAGGTAA TACGTGAAGA AGACGTGCTC GCGGTGGCGC AGGAGGAGGT GAAGAGCGGG AGGAGGGTGC TCATAGTTGT AAACAACATA TCTAAGGTAG TTAAGTGGTA CCAAGAGCTG AGGGACTACG GCGCCGTGCT TATCCACTCT CTCCTGACTA GGGAGGACAG GCGGAAGGCA GAGGAGGCGT TGTGCCCCGT TCCGGACAAA TGTGAAGCTC AGGGGGCTAG GATTGTGGTA GGGACAAGCG CTATAGAGGC GGGCGTAGAT GTCAGCTTTG ACACACTTAT CACATCTGCC GACTCGCCTG AGTCCGTGGC GCAGAGGGTT GGCAGAGTGT GCAGGCGCGG CGGGAAGTGC GAGGGGCGGA TATACGTCTT TGGCAAAGAC GCAGAGAGGT ACCTGGGCGT TAGGGAGTGG CGCCTCCCCT ACAAGGAGGG TAGCTACGTG CCTCTATTGT CGAAAAACTT GGAGTCGGAC AGGAGACTGG AGTGGTTTTT GCGCCAACTA TACCGCATGC TCTATGTTGA CCCAGATAAC TTGTCTAAGG TCTTTAAAAT TTTTGGATAC ACCTACGTTA GAGAATACGG CTTGCTTGAG GTTTGTACCT CCGTTGAATA CAGCCCTGAG AAGTGTTTCT CAACCTCGAT AGACAGAGTC AACTTCCCCG TGGGCGTGGT AGTAGATGGG AAGGTGCAGG AGGTGGAGAA GGTAGACGAG AGGTGGCTAA TGGAGTGGGT AGAGAACCAC GGCGAGTTTC CCATTCTCTA TGCGAAGAAG TATGTGCCAG GCGTGGGACC TCTATGA
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Protein sequence | MRRAILRAVE LVRRGVDKLV LELPTGYGKT EAAPVIYKAF RERGVCWKAI HVFPLRTLLH KTLEKYSKKY GDISFTYQDG DISLVKSGYV KDPYFTGEYV LTTIDSFVHN LFKAPVAELP RLLRGRSVHY HVPFAYIYPA CVFFDEAHIM AEGGQKAAAA LRVTVEALVD AEIPVVVMSA TLGEWKWEVF KGFEFVTLGP KGTAGYDPDF EAELEETRYV TKVIREEDVL AVAQEEVKSG RRVLIVVNNI SKVVKWYQEL RDYGAVLIHS LLTREDRRKA EEALCPVPDK CEAQGARIVV GTSAIEAGVD VSFDTLITSA DSPESVAQRV GRVCRRGGKC EGRIYVFGKD AERYLGVREW RLPYKEGSYV PLLSKNLESD RRLEWFLRQL YRMLYVDPDN LSKVFKIFGY TYVREYGLLE VCTSVEYSPE KCFSTSIDRV NFPVGVVVDG KVQEVEKVDE RWLMEWVENH GEFPILYAKK YVPGVGPL
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