| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1254 |
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| Symbol | |
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| ID | 4909190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1165842 |
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| End bp | 1166921 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640125007 |
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| Product | Linocin_M18 bacteriocin protein |
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| Protein accession | YP_001056144 |
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| Protein GI | 126459866 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1633] Uncharacterized conserved protein
[COG1659] Uncharacterized protein, linocin/CFP29 homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.574463 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTAAAC CTATGGCACT TTCTCACGAC TGGTGGACGG GTAATGTTTA TAACTTACAC
GTAGATATAC AAATGCTCTC TAAACACCCC CTTGAGATTC CTCCCGATAG GAAGTTGACA
AAGGGCGAGG TGGCGGACGC CCTTAGGCTT GCCATAATTG CCGAGTTAGA CGCCATTAGC
CTATACCTAC AGCTCGCCAG AGCCATAGAC GACGAGAAGG TGAGAAAAGT GTTTGAAGAC
GTGGCCAGGG AGGAGAAGAC TCACGTTGGA GAATTCTTGG CCCTGCTCAA GGGCCTTGAC
CCAGAGCTCG TCGCCGAGTT GGAGAAGGGG GCTGTGGAGG TGGCCGAGAA GGGCGGCGAC
CCGCCGCAGG ACGAGTGGGC CGAGTTGAGA GAGGCCGCGC GGCAGGCCGC CGACTCTATA
CGAGTGTTTA GGCGCTATAT CCCGACCACG AGAGTGGGCA GAGGCGTGGA GTACGTCCCC
GTGGAGAGAG AGGGCGTTCG CGACGCGGTG AAGCTCGTGG AGATCTCGGC CAAGTTTAAG
ATTAGCCAAG CCGCCTTGGA CTACGCCAAG AGGACTGGGC AGCCCTTAGA CGCGGGAGAC
GCCCTGCGCG CCGCCGCCGA GCTGGCGCTT GAGGAGGACA GGCTGGTGGC GCACACCCTC
CTCAACCTCT CCAATGCCCT AAAGATGGCG GCCACGAGCT GGGACGAGCC CGGCAAGGCG
GTGGCAGAGG TGTCTAAGGC GGTGGCGGAG CTCATTAAGG CAGGCGCGCC GGGGCCCTAC
ATCCTCTTCG TAGACCCGGC CAGATTCGCC AAACTAGTGT CGGTGTATGA GAAAACCGGC
GTAATGGAGC TGACTAGGAT AAAGGCCATT GTAAAAGACG TCGTCCCCAC GCCGGTTGTG
CCCCCCTCCG CGGCCCTGTT AATCTCGGCG TCTCCGCAGA CCCTCGACCT CGTAATAGGC
GCAGACACAG AGGTGGAGTA CCTCGGCCCA GAAGACGGGA AGCACCTCTT CCGCCTCTGG
GAAACCATAG CCGTAAGAGT GAGGCAGGAA AAAGGCGTGG CAGTGCTAAG AGAGGGCTAG
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| Protein sequence | MPKPMALSHD WWTGNVYNLH VDIQMLSKHP LEIPPDRKLT KGEVADALRL AIIAELDAIS
LYLQLARAID DEKVRKVFED VAREEKTHVG EFLALLKGLD PELVAELEKG AVEVAEKGGD
PPQDEWAELR EAARQAADSI RVFRRYIPTT RVGRGVEYVP VEREGVRDAV KLVEISAKFK
ISQAALDYAK RTGQPLDAGD ALRAAAELAL EEDRLVAHTL LNLSNALKMA ATSWDEPGKA
VAEVSKAVAE LIKAGAPGPY ILFVDPARFA KLVSVYEKTG VMELTRIKAI VKDVVPTPVV
PPSAALLISA SPQTLDLVIG ADTEVEYLGP EDGKHLFRLW ETIAVRVRQE KGVAVLREG
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