| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1106 |
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| Symbol | |
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| ID | 4910209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1039331 |
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| End bp | 1040581 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640124860 |
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| Product | rRNA biogenesis protein Nop56/Nop58 |
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| Protein accession | YP_001055997 |
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| Protein GI | 126459719 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAAG TTTACATACT GACGGACGTC TTGGGCTTCC TCGCAGTGGA CGAGGGAGGC
AGGGTGGTGG ACAAGGAGCT GTTTGAGCGA AAATTAGACG CCGTCGCCGC CAAGCTCTTG
GAGTTGGAGA AGTCTAACCC AGTCCCCGAG TTGCTTAAGC TGGTGGAGCG CGTGGGGAAG
ATGGGCACAG TGGTGGTGGA GGACCCAGAG CTGGCTAGGA AGCTTGTCGC GGCGACGAAG
CTCGAGGTAG TGGCCGAGAG TCCCGCCCCC CTGTTGGTAG AGGTGAGGCG TAACTTCGAT
AAGTACCTGC CGGAGCTGGG CCTCTCCTGG GAGGAGTACA GGAAGTTCTT GTTCGAGGTA
AGCGACTTGG TCACTAGGCT TAAGCTTAGG CAGGCCGTGG AGAAGAGAGA CCTCTTCATA
GCGCAGGCCA TAAGCGCGCT CGACGACGTG GACAAGATTC TGAACCTCAT CGCGTCGAGG
ATCAGGGAGT GGTATGGGCT CCACTTCCCA GAGCTTGAGG AGCTGGTGAG AGACAACAAG
GAGTACGTCA AAATCGTCTA CCACATCGGC CACAGGTCTA AAATCAGCGA AGAGGCCTTG
ACAAAGGTCC TGCCTGGCTT GCCCGAGGAG AGAGTTAAAA GGATTGTAGA GGCGGCTAAG
AAGAGCATTG GCGCCGAGAT GTCGGAGTGG GACTTGGACC AAATCAAGGC CTACGCCGAG
GTGTTTCTAA AGCTAGACGC TTACCGCGAA AGCTTGGCCA CCTACATCGA CGACGCCATG
AAGGACGTGG CACCCAACAT TAGAGAGCTC GTGGGCCCCC TGCTCGGCGC GAGGCTGATA
AAGCTGGCCG GCGGCCTAAC GCGTATGGCC TTTCTGCCCG CCTCAACGAT ACAAGTCCTC
GGGGCAGAGA AGGCCCTATT CCGCGCCTTG AGGACTGGGG GCAAGCCGCC AAAGCACGGC
GTGATATTCC AGTACCCGGA GATATTTAGG TCGCCTCGCT GGCAGAGGGG GAAGATAGCG
AGGGCTCTCG CGGCTAAGCT GGCGATAGCA GCTAAGGCAG ACGCCTTCAC TGGGAACTTC
ATCGCGCCGA GACTAAAGGA GGAGTTAATG AAAAGGATAC AGGAGATAAA GACGCTCTAC
GCCAAGCCTC CCCCCAAGGC GCCTCAGCCC CAGGCCAAGG CACCTCCGCC TCCTCCCAAG
GGCGGCGAGA GGCGCCAGCC CCCGCCTCCA CCGTCGCGCA GACGGCGTTA A
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| Protein sequence | MAKVYILTDV LGFLAVDEGG RVVDKELFER KLDAVAAKLL ELEKSNPVPE LLKLVERVGK
MGTVVVEDPE LARKLVAATK LEVVAESPAP LLVEVRRNFD KYLPELGLSW EEYRKFLFEV
SDLVTRLKLR QAVEKRDLFI AQAISALDDV DKILNLIASR IREWYGLHFP ELEELVRDNK
EYVKIVYHIG HRSKISEEAL TKVLPGLPEE RVKRIVEAAK KSIGAEMSEW DLDQIKAYAE
VFLKLDAYRE SLATYIDDAM KDVAPNIREL VGPLLGARLI KLAGGLTRMA FLPASTIQVL
GAEKALFRAL RTGGKPPKHG VIFQYPEIFR SPRWQRGKIA RALAAKLAIA AKADAFTGNF
IAPRLKEELM KRIQEIKTLY AKPPPKAPQP QAKAPPPPPK GGERRQPPPP PSRRRR
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