| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1058 |
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| Symbol | |
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| ID | 4909346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 997140 |
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| End bp | 999890 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640124810 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001055949 |
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| Protein GI | 126459671 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.164302 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATAGGG GCTCGGACGT TTTTGCTAAG CTCCACCCCC GTGTTAGAGA GGCTATCTAC
AAGTTGGGCT ATGTTGAGCC GACGCCTGCG CAGAGGGAGG CTATTCCCAA GGTCTTGGAG
GGGCGCCACG TATTGTTGAT TGCCCCTACG GGTTATGGGA AGACGGAGGC GGCGCTTTTT
CCCATCTTCT CTAAGATGGT GGAGGGCGGG GGGTCTGGGC TTCGTTGTCT CTACATAACT
CCTCTCAGGT CTCTTAACAG GGACTTGCTT AAGCGGCTGG AGAGTTTAGC CGCGGAGTTG
GGGTTTTCCA TAGCTGTGCG GCACAGCGAT ACGCCGGAGC GGGAGAGGCG TATCATAGCC
TCTAGGCCGC CTGATGTCCT CATCACCACG CCTGAGTCTC TTCAAATTCT TTTGCTTAAC
AAGCGGCTTA GGCCCGCGCT GAGGGAGGTC CGATACGTGG TGGTCGACGA AGTTCACGAG
CTTGTGAACA GCAAGAGGGG GGTCCAGCTC GCCGTTGGGC TCGAGAGACT TGTGGAACTC
GCGGGGGAGT TTCAGCGTGT GGGCCTCTCC GCCACGGTGG GCTCGCCCCG GCTGGTTGCT
GAGTACTTGG GCGGGGGGAG GCCAGTGGAG GTGGTGGACG TGTCTGGGGA GAAGAAGTAC
GAGGTGGACG TAGTTCTGCC TACGCCCTCT GAGGAGGACT ACCTCGACGC AGAGCGGCTC
GACGCCACGC CAGAGGCTGT GGCCAGGATT AAGAAGGTGG CGGAGTATAT TAAGTCGGCG
AGGGGCAGAG TTCTCGTTTT TACAAACACT AGAGATGGGG CAGAGTTCCT CGCCTCTAGG
CTGAAGTCGC TCGGCGTAGA TGTGGAGGTG CACCACTCCT CTCTTGCCAG AGAGCATAGA
GTAGCCGTGG AGGAGAAGTT CAAGAAGGGG GAGCTCAAGG CGGTCGTAGC TACCTCCAGC
TTGGAGCTGG GGATTGACAT AGGCGAAGTG GAGCTGGTGG TCCAGTATGG ATCGCCTAGG
CAAGTCTCTA AGCTGGTGCA GAGAGTTGGG CGTAGTGGCC ATAGGCTTGG CCTCGTCTCT
AGGGGGATTG TCGTGGCGGC AGATGTGGAG GACTTGGTGG AGTCTGAGGA GATTGTGGAG
AGGGCTCTTC GGGGGGAGCT GGAGGGAGAG GTAGAGTATC ACGAAAGCGC CCTCGACGTG
CTTCTACACC AAGTGGTGGG CATAGCCCTT GAGGCTAGGA TAGATGGGCG AGAGATCGGC
TTTGAGTATT TGATGGGGGT TTTGAAGAGA GCTCACCCAT ACAGAAATCT CACGGAGGGT
GATCTCCGCC TTGTCTTAGA TTTTGCCGAA CGCCATGGGC TACTGAGGGG GCTGAGGCCT
AGGAAGGGGA GCGTCAAGTA CTACTTTGAA AACGTGTCCA CAATACCCGA CGAAAAGAGC
TACAAGGCCG TCGACGAGAC TACGGGGAGA ACTGTCGGCG AACTTGACAG AGAGTTTGTC
TACTCAATCG AGCCCGGGAC TAAGATTGTC CTCTCTGGCA GAGTGTGGGT TTTCGCCAAG
AAGGAGGGCG ATGCGGTCTA TCTATACCCG GACTACGACG TGGCGGGGGC TCTCCCCGCC
TGGGTGGGGG AGCAGATACC TGTGCCCTTC GAGGTTGCCC AGAGGGCTTG TGAGCGTAGG
AAGGAGCTCG TTATATCTGC GCTCCGTGGC GAGGTGGACT TGCCCATAGA CTTGGAGGGT
TTGGACATAG AGCTCGTGCC GGGGCTCAGC CCGGTGCATG TGCACGTAGT TAGTGGCAGG
TATGTAGTTG TACATAGTTG CCTGGGTCAT AAGGGTAACG AGGCCTTGGG GCTCTACCTC
TCCCATGCCT TGTCTGGCTA TGTGGGACCA GTGGGCTATA GGGCAGATGC GTATAGGGTG
CTCTTGATTT TTAGGGACTT CTTCCCAGCG CAGGCATTTG ACGAGGTTTT AAGAAAGCCC
CATAGCTTTG TCTATAAGAC GTTGCAAAAC GCTGTGAAGA GCTCTAAGCT GTTTAGATAT
AGGTTTCTCC AGGTAGCTAA GCGGGCCGGT GTTATTTCTA AAGACGCCGA GGAGATTCCA
CAGAGACTCG TAGACGTATA TGTAGACGAC TTGCCGGGAA TAGAGGCCGT GAACGAGATA
TTTGTGGAGC GGCTCGACGT GAGGGCCTTG TTTTCTTTCC TAGAGAGGGC TACGGAGGGG
GGCTACGTGG TTAAGAGGCT GGCCAAGCCC ACTGCCCTGG AGAAGCCAAT ACTGGAAGAG
GCGTTGCGTC TGGATTTCTC GTTTAGAGGA CTCTCAAGGG AGACGCTGGC AGACCTAGTG
CGGAAGAGGA TTTTGAACAA ACCTGTGACA CTTCTTTGCA TAAACTGCGG CTGGACTCTT
ACGACTAAGG CAGTTGCCCT CCCAGAGGAC GTGTTTTGCC AAAACTGCGG CATGAGGGTC
TTGGCCGTGG TTAAGGGAAT TGACTTGGCC AAGGCTAGGC AAGTATTAAG CAAGCTTAAG
ATACGCCAGA GACTGTCGCC CGAGGAGAGG AAGGTGGCGG AGTATTTGCA ACAGAGCGCC
TCCATTGTTC TCCAACATGG TAAACTTGGC GTGTTGGTTC AACTGGCCCA TGGAGTGGGG
CCAAAGACCG CCGTTAAGAT ACTCAACAAG GTCGTAGAGG GGGGAGATCT CTGGAGCGCC
GTCTTGGAGG CAGAAAGGCA GTACGCTTCT ACCAAGGCTT TTTGGGACTA G
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| Protein sequence | MDRGSDVFAK LHPRVREAIY KLGYVEPTPA QREAIPKVLE GRHVLLIAPT GYGKTEAALF
PIFSKMVEGG GSGLRCLYIT PLRSLNRDLL KRLESLAAEL GFSIAVRHSD TPERERRIIA
SRPPDVLITT PESLQILLLN KRLRPALREV RYVVVDEVHE LVNSKRGVQL AVGLERLVEL
AGEFQRVGLS ATVGSPRLVA EYLGGGRPVE VVDVSGEKKY EVDVVLPTPS EEDYLDAERL
DATPEAVARI KKVAEYIKSA RGRVLVFTNT RDGAEFLASR LKSLGVDVEV HHSSLAREHR
VAVEEKFKKG ELKAVVATSS LELGIDIGEV ELVVQYGSPR QVSKLVQRVG RSGHRLGLVS
RGIVVAADVE DLVESEEIVE RALRGELEGE VEYHESALDV LLHQVVGIAL EARIDGREIG
FEYLMGVLKR AHPYRNLTEG DLRLVLDFAE RHGLLRGLRP RKGSVKYYFE NVSTIPDEKS
YKAVDETTGR TVGELDREFV YSIEPGTKIV LSGRVWVFAK KEGDAVYLYP DYDVAGALPA
WVGEQIPVPF EVAQRACERR KELVISALRG EVDLPIDLEG LDIELVPGLS PVHVHVVSGR
YVVVHSCLGH KGNEALGLYL SHALSGYVGP VGYRADAYRV LLIFRDFFPA QAFDEVLRKP
HSFVYKTLQN AVKSSKLFRY RFLQVAKRAG VISKDAEEIP QRLVDVYVDD LPGIEAVNEI
FVERLDVRAL FSFLERATEG GYVVKRLAKP TALEKPILEE ALRLDFSFRG LSRETLADLV
RKRILNKPVT LLCINCGWTL TTKAVALPED VFCQNCGMRV LAVVKGIDLA KARQVLSKLK
IRQRLSPEER KVAEYLQQSA SIVLQHGKLG VLVQLAHGVG PKTAVKILNK VVEGGDLWSA
VLEAERQYAS TKAFWD
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