| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1034 |
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| Symbol | |
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| ID | 4908420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 969891 |
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| End bp | 971258 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640124786 |
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| Product | preprotein translocase subunit SecY |
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| Protein accession | YP_001055925 |
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| Protein GI | 126459647 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00000391627 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGATTTTC TAACCTTCAT ACCCACAGTC CCGAGGCCGC CTAGGCGGTT GTCGATATCT
AGGAGGCTGT TTTGGACGGC CGTAGTAGCA ACTATCTACA TACTTATGAC GATAACGCCG
CTCTACGGGA TTCCGCATAC CCAAGCAGCG CAGGGAAATC CTCAGCTTCA GCAACTCCTC
TCCATAATCT TCGGCACGGC GTCGGGCACG CTTGCCCACC TCGGCATAGG TCCCATCGTC
ATAGCCGGTA TCTTGATGGA GGTTTTCGCG TTCTCCGGCG TATTGAACCT AGATTTAAAC
AAGCGGGAGG ATAGGCTCAA GTTTACGTTG ATGCTGAAGT GGGCGGCCCT GGGAATAGCG
GCTTTAGAGG CGACTGCTTA CGTGCTGGGC GGCCAATTCG GCACTGTTAC GCCTCTCGGC
GGAGTGTTAA TAGTCCTCCA ACTGTTGCTG GCCACAGTCA TAATACTGCT CCTAGACGAC
TTGATGTCTA AGGGCTGGGG TATCGGTAGC GCTATTAGTC TAATAATATT CTTGGGAGTG
TCTAGGCAGA TATTCCTAAG CCTATTCTCC TGGGACACAG TCCAAGACTC TAACGGCAAT
ACGCAAGTCT TCGGTCTTCT CCCCGCGCTT GGAGTAGCCT TGTACGACCT CTTTACTTCT
GGGAATGCAA ACACCTTGCT GGGGCTTGTA AACCGCCCAC TAACCGTCAA CACCTACCTC
CCCGACTTCG TAGGGCTTGT CGCCACAATC CTCCTAGGCT ACATAATACT CTACCTAGAA
ATGATGAAAG TGAACATACC CGTCGCCTCT GCGCAGTACC GTGGAATTAA GTTCACAATA
CCCCTGCGCT TCGTCTACGT GTCGGTACTG CCAATAATAT TCACCACCTA CTCGCTACTG
CTGGTGGGGC AACTCTTGCA ACCATTTGCC GCAAACAACC CGGCGCTAAT TACGGTCCTC
AATGTGATAT TTCTGCCGCA TAGATATTTC GACCCGCTTC TCATAATACT CAACTTCGCC
CTGTACGTGG CCCTCGCCAT AGCCTTTGCT TGGATTTGGG TGCAGTTGGC TGGGCTAAGC
GCCGAGGATC AAGCAAGGCA GTTTACGCAG TCACAGCTAC ACGTCCCAGG GTTTAGGCAG
AGCGAGCGCG TGTTGGCCAA AATCTTGGAG AGGCCTATAA ACGCGTTGAC TATCATAAGC
GGATTTATAG CAGGCACCTT TGCGTCTCTT GGAAACGTGC TAGGCGTGTG GGGCGGCGGC
GTGGGGCTAA TACTGCTCGT CGAAATTGCC CTACAGTACT ACGCCTTGGT GATGCGGGAG
CAGTTGCTCG AGATGTACCC AGGCCTCAAG GAGGTTCTAA GCAGGTAG
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| Protein sequence | MDFLTFIPTV PRPPRRLSIS RRLFWTAVVA TIYILMTITP LYGIPHTQAA QGNPQLQQLL
SIIFGTASGT LAHLGIGPIV IAGILMEVFA FSGVLNLDLN KREDRLKFTL MLKWAALGIA
ALEATAYVLG GQFGTVTPLG GVLIVLQLLL ATVIILLLDD LMSKGWGIGS AISLIIFLGV
SRQIFLSLFS WDTVQDSNGN TQVFGLLPAL GVALYDLFTS GNANTLLGLV NRPLTVNTYL
PDFVGLVATI LLGYIILYLE MMKVNIPVAS AQYRGIKFTI PLRFVYVSVL PIIFTTYSLL
LVGQLLQPFA ANNPALITVL NVIFLPHRYF DPLLIILNFA LYVALAIAFA WIWVQLAGLS
AEDQARQFTQ SQLHVPGFRQ SERVLAKILE RPINALTIIS GFIAGTFASL GNVLGVWGGG
VGLILLVEIA LQYYALVMRE QLLEMYPGLK EVLSR
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