Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1006 |
Symbol | |
ID | 4908155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 949626 |
End bp | 950831 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640124756 |
Product | hypothetical protein |
Protein accession | YP_001055897 |
Protein GI | 126459619 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTTAA GTGATTACAA AGTGTTGTTT ATGCTTTTTG AACTGTTGCG GCTGTCATGG AAGGCTTTGT GGGAGCGTAG GGGGAGGACT ATAGGGGCCA TCGTGGGCGT CGTCATTGCG TTTACTGCGC TTAGCTTTTC GCTTCTGTTG ACGCAAACGA TGAAGGAGGC CGTGGCTGAG TTTTTTGAGA AAAACTTTGG CCTCAACATA GTCATGTTAG TCGGCTCGCT TTTCACCGAC GCAGACGTGG CGTCCTTGTC CTCCATAGAG GGGGTAGAGG CGGTGGTCCC CATGGTGGCG TACAGGGGCC GTGTCAGAGT GCCCGGCAGT GGGGAGTTCA TTGCGGCGAA CGTGTACGCC ATAAACCCGG CAGATGTCCC CCGGGTTATA CCGCAAGCGG CGCTACACGA CGGTCAGCTC TTTGTGGGAC AGGGCTTCGC CTTGGCGGGG TACTATATCG CATACGACAG ATCCACAGGT GAGCAGAGGG TGGGCCCCGG CTCCATTATT TCGCTCGACT TAGAGAAGAA GGCTGTGAGC CTGGTGGTGG CTGGGGTGCT GGCCGTGGGG AGCATAGGCT TCTTCAGCAC TGCCACTGGG GTGGTTATTG ACTTAAGCGA GTATCGACGG CTCACAGGCT TTGAGAAGTA CAACGTGTTG GTGGTGGTTG CTAGGGACTC CTCCCTTGTT GATGACATTA TCAGCGAGGT GAGGGCCAGG TTTCCGACCG CCGAGATCCT ATCGCCCCAG GTTATACTCA AGTCGATCAA CGCCTTTTTG ACAGGTTTTC AAGCGTTTCT CGGCCTAGTG GCTGGGGTCA GCACTGTTAT CACAGCGCTT TGGCTGTACG ACACCATGAG CATAAGCGTC TTGCAGAGGA CTAGGGAGAT CGGCATTATG AGGGCTGTGG GGTTCAAGAG GAGGCACATA ACCCTCATGT TCCTCGGCGA GGCGTTCATA ATAGCCGCAA TAGGCGTGGC CATTGGCTCT GTACTCCTCG TGCCGCTGTC CGACATAGAC CTGTCTACGT TATTTAACGC TGGGCCCGAT ATGTCATTTC TCCCACCAGG CACGAGGCTG ATAATCGACC CGACCGCAGT AGCCGCAGCC GTCATGGTGG TAGTTGCTGT CAACCTCATT GGCGCCTTGG CGCCGGCAAT ACGGGCAAGC AGAATAAGGC TAGTAGAGGC ACTGAAATAT GAGTGA
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Protein sequence | MNLSDYKVLF MLFELLRLSW KALWERRGRT IGAIVGVVIA FTALSFSLLL TQTMKEAVAE FFEKNFGLNI VMLVGSLFTD ADVASLSSIE GVEAVVPMVA YRGRVRVPGS GEFIAANVYA INPADVPRVI PQAALHDGQL FVGQGFALAG YYIAYDRSTG EQRVGPGSII SLDLEKKAVS LVVAGVLAVG SIGFFSTATG VVIDLSEYRR LTGFEKYNVL VVVARDSSLV DDIISEVRAR FPTAEILSPQ VILKSINAFL TGFQAFLGLV AGVSTVITAL WLYDTMSISV LQRTREIGIM RAVGFKRRHI TLMFLGEAFI IAAIGVAIGS VLLVPLSDID LSTLFNAGPD MSFLPPGTRL IIDPTAVAAA VMVVVAVNLI GALAPAIRAS RIRLVEALKY E
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