| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0933 |
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| Symbol | |
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| ID | 4908918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 883913 |
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| End bp | 884653 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640124681 |
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| Product | exosome complex exonuclease Rrp41 |
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| Protein accession | YP_001055824 |
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| Protein GI | 126459546 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0689] RNase PH |
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| TIGRFAM ID | [TIGR02065] archaeal exosome-like complex exonuclease 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGC CCCCAGTGCC TTTACTCCAA AACGGGCTCC GCGCCGACGG CAGAGCGCCT
GACCAAATGA GGGAGGTCCA GATACAGGTT GGCACAGTTT CAAACGCCGA CGGATCAGCC
GTGGTGTCCT ACGGCGCCAC CACGGCGGTT GCGGCCGTGT ATGGGCCGAG GGAGATGCAC
CCGCGACACT TATCTCTCCC AGACCGCGGA GTCATGAGAG TGCGCTACCA CATGGCGCCA
TTTAGCACAA AGGACGAGAG AAAGAGCCCA ACGCCCTCGC GGCGCGAGAT AGAGATCTCC
AAGGTTTTAA GAGAGGCGCT AGAGCCAGCC GTCATGTTGG AGCAGTACCC CCGCTCCAGA
ATCGACGTGT TCATCGAAAT TCTACAAGCA GATGGGTCAA CCCGAGTGGC CTCCCTCACC
GCGGCCTCAC TGGCGTTGGC AGACGCGGGG ATATACATGA GAGACCTAGT GGTGGGCGTC
TCAGTGGGTC TCGTCGACGG CACAGTGGTG CTCGACTTAA ACGGCCTCGA GGACAACTAC
GGCGAGGGCG ACATGCCAGT GGGCTACATG CCGAACTTAA GGCGGTTCAC GTTGCTCCAG
CTAGACGGGG CGTGGACTCG GGAGAAGTTC CTAGAGGCAC TCGGCTTGGC GGTGAAAGGC
GCGGAGTACG TCTACCAAGT GGCAAGAGAG GCGCTTAAAA ACAAGTACAT GGCCATAGCG
GAGGAGATAT ACGGGAGATA A
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| Protein sequence | MKKPPVPLLQ NGLRADGRAP DQMREVQIQV GTVSNADGSA VVSYGATTAV AAVYGPREMH
PRHLSLPDRG VMRVRYHMAP FSTKDERKSP TPSRREIEIS KVLREALEPA VMLEQYPRSR
IDVFIEILQA DGSTRVASLT AASLALADAG IYMRDLVVGV SVGLVDGTVV LDLNGLEDNY
GEGDMPVGYM PNLRRFTLLQ LDGAWTREKF LEALGLAVKG AEYVYQVARE ALKNKYMAIA
EEIYGR
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