| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0866 |
|---|
| Symbol | |
|---|
| ID | 4908446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 825158 |
|---|
| End bp | 826300 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640124615 |
|---|
| Product | tRNA-modifying enzyme |
|---|
| Protein accession | YP_001055758 |
|---|
| Protein GI | 126459480 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0731] Fe-S oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTTGCG CTGTTCCTTT GGACAAGCTT ATATATAGAG AACGGGGCTT ACCTGTGTCC
TGCGAAGTTG AGCCCATTGG CCGCTACCAC GTGTTGGAGG GGCCGCGGAT TAAGATTAGG
GCATCTGCCG GCAGGGCGCT CGTGGAGCGG CACTACGGCT TTGTGGGCCA CGCCGCCGTG
GAGCTCTGTA AGTGGACTAG GGAGGCCATC GAGGGGGGCA AGTCTTGCTA CAAGGTGAAG
TTCTACAACG CGCCGGCGGG GGGCTCCCAC CGCTGTGTAG AGATGAGCCC CGTGGGGCTT
GTATGTAGCA ACCGTTGTGT CTACTGCTGG CGCCCCACGG AGGAGTTCGA CGCCTTTGTC
CTCGACGAGA GGTTCTACCT AGAGCCCGAG GAGATCGTGA GGGGGGTGTT GAAGGAGAGG
GTGCGCCTCT TGTCGGGGTA CTGGGGCCAC CCCGAGGGGA AGAGACGCGT CAAGGAGGCG
CTGGCGCCTA CCCACTGGGC TATTTCCCTC TCGGGGGAGC CCACTATGTA CCCAAAGTTG
CCAGAGTTGA TAAAGCTGAT AAAGTCGCTC CCCGAGACCA AGTCCGTATT CCTTGTCACA
AACGGCCAGC ACCCAGAGAT GATTAAGCGG CTTTGGGAAG AGGACGCCCT CCCCACGCAG
CTCTACCTCT CCACTAACGC CCCCAACAAG GAGCTGTACT ACAGGGTGAA CGTCCCCGTG
TACAACAGGG AGGACGCCTG GGAGAAGTGG CTCCAGTCGC TTGACCTACT CGCAGTGGTG
CCCACGAGGA CCGTCATGAG GATTACTCTG ATAAGGAGCT TGAACTACGA CGAGAGGTAC
ATCCCGCAGT TCGCCGAGCT TGTCAAGAGG GGCAACCCCC ACTTCGTCGA GGTAAAGAGC
TACATGCACC TAGGCCACTC CACCTTCAGG CTGAAGAGGG AGGACATGTT GAGCCACGAG
GAGGTCAAGG CTTGGGCATA CAAGCTCTTG GAGGAGCTGA GGAGGATAGG CGCCGACTTT
GTCTACATGG ACGACGACGA GCCCAGCCGT ATCGTCGTCT TGCAGAACAT GAAGAGGTAT
GTAGACCGCT GGATTGTGCC CCCGGCTAGT GGCAACGGCT CTGCCCCACG TAGTTCAAAA
TAG
|
|---|
| Protein sequence | MCCAVPLDKL IYRERGLPVS CEVEPIGRYH VLEGPRIKIR ASAGRALVER HYGFVGHAAV
ELCKWTREAI EGGKSCYKVK FYNAPAGGSH RCVEMSPVGL VCSNRCVYCW RPTEEFDAFV
LDERFYLEPE EIVRGVLKER VRLLSGYWGH PEGKRRVKEA LAPTHWAISL SGEPTMYPKL
PELIKLIKSL PETKSVFLVT NGQHPEMIKR LWEEDALPTQ LYLSTNAPNK ELYYRVNVPV
YNREDAWEKW LQSLDLLAVV PTRTVMRITL IRSLNYDERY IPQFAELVKR GNPHFVEVKS
YMHLGHSTFR LKREDMLSHE EVKAWAYKLL EELRRIGADF VYMDDDEPSR IVVLQNMKRY
VDRWIVPPAS GNGSAPRSSK
|
|---|
| |