Gene Pcal_0780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0780 
SymbolrnhB 
ID4910247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp748310 
End bp748933 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content57% 
IMG OID640124529 
Productribonuclease HII 
Protein accessionYP_001055672 
Protein GI126459394 
COG category[L] Replication, recombination and repair 
COG ID[COG0164] Ribonuclease HII 
TIGRFAM ID[TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGATTTC CACAAGATTT ATTGAGCAGA CCCTATTTAA CCGTGATCGG AGGCGTCGAT 
GAGGCGGGTA GGGGGCCGCT GGTGGGGCCG TTGGTGATAG CTGTGGTAGT TGGCGACAGC 
GACGTCCTCC TAGGGGTGGG GGTTAGGGAC TCCAAGGCCT TGAGCCCTGG GGCTAGGGAG 
AGGGTGTTTG CCAGAGTGCT GGAGGTGGCG GAGTGCGTAA ACTACATAGT AGTGGAGCCG 
CACATAGTGG ACATGTATAC GTCTAAGGGC CTCCTCAACG CGCTTGAGAT AGACTACACT 
GCCAAGTTGT TGGCCACGTG CCCTGCCGAT GTGTACTACG TAGATTCGCC AGATGTGAAG 
CCTGAGAGGT ATGGAAGCGC GTTGTCTATG GCCACTGGTA AGCGCATAGT GGCGCTTAAC 
AAGGGCGAGC GCGTGCCCCA GGTGGCTGCG GCGAGTATAG TGGCCAAAGT GGTGAGAGAC 
CGCTTGATAG ACTTGTTGAA GAGGGAGGTG GGGGACTTCG GCAGTGGCTA CCCCTCTGAC 
CCGCGTACGG TGGAGTTTGT AAAACGCGGA CTCGTGCCCA GCGAGTGTAT TAGACACTCG 
TGGAAGGTGA GGTTTAAAGT ATAA
 
Protein sequence
MGFPQDLLSR PYLTVIGGVD EAGRGPLVGP LVIAVVVGDS DVLLGVGVRD SKALSPGARE 
RVFARVLEVA ECVNYIVVEP HIVDMYTSKG LLNALEIDYT AKLLATCPAD VYYVDSPDVK 
PERYGSALSM ATGKRIVALN KGERVPQVAA ASIVAKVVRD RLIDLLKREV GDFGSGYPSD 
PRTVEFVKRG LVPSECIRHS WKVRFKV