| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0396 |
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| Symbol | |
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| ID | 4909754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 378571 |
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| End bp | 382098 |
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| Gene Length | 3528 bp |
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| Protein Length | 1175 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640124149 |
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| Product | formate dehydrogenase alpha subunit |
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| Protein accession | YP_001055297 |
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| Protein GI | 126459019 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0603241 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGTGC AGACCACTAG GCGCTCGTTT ATAAAGATAT CGGCATTGGC CGCGCTGGCG
CTCGGCCTCC CTGCCTCGGC TCAGCAGGGC TTTACCGCGG CTAAGACGAG GTGGGCGCTT
GGCGAAGTGG GGGGCAAGAC CGGGCTTCAG CAAGCCAGGG TTATGCCCAC GATATGTCCC
TACTGCTCCA TGGGGTGTTC CATTGACATG TATACGGATG GGCAGAGAGT TATCTGGTCT
GCCGGCTCCA CCGACTCGTA TATCAACTGG GGGGCCTTGT GTCCAAAGGG CAAGGCGGCC
TTCCAGCTCG TCAATAACCC ACGCCGGCTT ATGTATCCGC TTATTAGGAC TGGGCCTAAG
CCGCCCGTCG AGGAGATCCT AGCCGCCAAG ACCTGGGACG AGCTCTTGGC CGTGTTGAAG
AAGTACCCGC CGCAGTGGAG GCGGGCAAGC TGGGACGAGG CTCTATCATA CATCGCCGGC
AAGCTCGCCG GCATTTTAAA CGCGTGGCGC ACCTCCACGG GGGCGCCTAA GCAGTCCGAC
GGATTCTACT ACGTGGGCGC CAAGAGCCCT GTCATGATAA TAGGCTCCTC TATTCTGGTG
AACGAGGAGG GTTACCTCTC AAGGAAGCTT GCCGCCTTCT TGGGCACCTC TAACACAGAC
TCGCAGTACC GCAAGTGCCA CTCTTCCACT GTGAGCTCTC TCGCCGTTAC CTACGGCTGG
GGCGCCGAGA CCGCGTCCAT AGAGGACGTG GCCTTGGCCG ACGTGGTGCT CTTCTTCTCA
AGCCCCGCGG AGGCCCACCC GCTGTCCTTC TACTACTTTA TGAAGGGGAA GAGGGAGCGC
GACACCATCT TCATAACCTT TGACCCAAGG TACAGCAGGA CGGCTGCGGC GAGCGACATA
TGGGTGCCGT TTAGGCCTGG CACAGACACC GCCATCTTCA ACTACATCCT CCACTACGCG
TTCTTTGAGA GAAACCCGCC CATTGACCAA CTGCCGGAGT TCCAGCGCCT AATGGCGCGG
TGGAATATCA CCAACGACGA CTTGGCAGAC TTGAAGGAGA TGTTAAAGGA ATACGACGTA
GACACAGCCT CGGCCATAAC GGGCGTGCCG AAGGAGCTGT TGAGGACTGT GGCCCAGATA
TACGTGGAGA ACAGCGGCGT AGTCACCGGC CACAAGAAGC ATGGCATAGT ACAGTGGGCC
ATGGGCTTTA CTCAGCACAC AAACGCCACA ATCAACATCA TAAGGGCGGC GGCCATTACG
CAACTCCTCT TGGGCAACGT GGGGTACCCA GGCGGGGGGA CTCACCCATT TAGAGGCCAC
AGCAATGTCC AAGGCGTCAC AGACGTGCAA GGAGGAGGGC TAGGCGTCTT GCCCGGCTAC
CACTCCCCGC CCTCCAGCGC CTTTGACGTG AGGCTGTACC AAGACTGGAA GTTGCAGGGG
ATGCCAGACG CCTGGAACTG GGAGATCCCC CAGTGGGCGC AGGGCAAAGT CGCCACGAGC
ACACCCTCCA GGGGCAAGGC AGATTTGACC AAGGTGTTGC AAGTGTTCAA CTTCTACGGC
TGGCGCAGGC TTGAGCTTGT GTGGGGGGTC TTCTGCGGTA CTGTTCCAGA GGACGACCCA
GTAAACGGCG TGGTGGTGTG CGACTTGCCC TTCGGCACCG GCGCGTCGGA GGTCACGTTC
CCGAGGAAAG CCCTCGCGGG CGATATAAGG GCTGCGTTTG TGTTCGGCGA GAACCCCGCC
GTGTCTAATC CAAACGCCAA AGTGGTGATG GCGGGCTTGG CCAGCCTAGA CCTCCTGGTC
GTGAGCGACA TATTTGAGAC TGAGACGGCG TACTTCGCCG ACGTCGTTCT ACCGGCGGCG
TCTTTCGCCG AGAAGGAGGG GACCAGGACC GACGGCAATA GGGTGATTCA GTGGACTTGG
AGGGCAGTGG AGCCCGTGGG CGAGTCTAGG CCCGACTACT GGATAATGGC CCAGTTGTAC
AAGTATCTGA GGAGGGCCGG CGCCGTGGTT TTGCCCAGCG AGGCGGCTGG GGTCAAGAGC
GAGCGCGTGA AGTTTAGGAA GAGGGGCCAG CTCATCTTCG TCTACGAGAG GCCGCTTAAG
CCAGACCGCT CGTGGGACTA CTCGGGAGGC TCCGGCGAGG CGGCTCCCAT CTCCGAAATA
GAGGCCGCGG CTAATCCGCG GATAATAAGC AAGGAGATAA ACTACGCCGT CTTCATATAC
CAAGGCATAT ACGACCCCGT TAGAGACGAG TTTACCCCAA TGCGGAGGAA CAATAGGCTG
AGGAAGCCCG GCGAGATCGA TGGCACATTT AGCCAAGAGT TCAAGGTGTA CAAGGACTGG
GGCTGGTCTT GGCCCATGAA CGTGCGCTTT ATGTACAACT ACGACTCGCT TCAGGCGGTG
TTGGGCAAGG CCGACGTGGT GACGGCCGCG GGCAAGCAAT GGACTGTGAC GGGGGAGACG
GGTGAAATTA TCGACGAGTA TACGGGCGAG TATAGGCCCG CCTTTGTGCC AGGCCACAAC
TTCTGGGCGC CCAGGAGCTT TAAGAGGAGG CTGAGCGGCG TCTCCGACCT CTTCGGTGGA
TTAGACATCA TAGAGTTCAT TAGGACCGGC CAACTTGTGA TACCTGGGAA ATTCGTAGTA
GAGGACGGGG GGGAGGTTAA GGTGCTCGGC TTTGAGGAAT TCGCCGCCGC GACCGGCATG
AGGTATCTCT GGGCTAACGA CGCTGTGTAC TGGGACGAAG AGGCGCTGTC TATGAAGGCG
GCGTTAAAGA GGCCCTTCTA CTCCGGCGGG GGCTGGGCGC AATTTAAGCC TAACTACGAG
AAAATGCGCC AGTTGCTACA ACAGTACTAC CAGCAGACCG GCGATTTGAG GACGGCCACG
TTGAAGGTTA TAGAGGAGAT GGGCGGCTGG TATAAGGGGT ACAACTTCCA GTGGCCTATA
CACACCGAGC CTGTGGAGAG CCCCCTGGTA GAGATGGCGC TTAAGTACCC CACACTCGCG
TGGACAAATC CCTACAACTT GGACGTGTTG ACTAACAAGC CGGCCGCAGT GAAGGACTTC
CCCGTGGGCG TCGCGCTTGA GCCGAAGCAG CTGGAGGACT TGTTGAAGCA GTGGGGCGTG
GCCGACGCCG TTATTGTGGC GATGACGTCT AATAGGCTCA CAGAGACGTG GCACACGGGA
GCCATGTCTC GCAACGTGCC TTACCTAGCC CAACTCGTCC CTGCGCCGTT TGTATATGTG
CCGAGGGCCT TGGCCCAGAA GCTGGGCATC CAGAGCGGCG ACTACGTGGA ACTCTGGACT
GCGAGGGGGA TGTTGAAGAT GGTGGCCTAC GTCACCGATG GCGAGGCGTA TCTAAACGTG
AACGGCAAGA CTGTCCCAGT GGTAAACGTA CAGTGGAGCT TCAGCTTCAT GGGCGACGTC
ACTGGGCCGC AGGGCAACTT CCTCACGCCT GACGTCGGCG ACGTGGTTAC AACGATTCAG
GAATCTAAGG CGTGGCTTGG CGCAATAAGA AAGGCTAGGT CGGTGTAG
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| Protein sequence | MTVQTTRRSF IKISALAALA LGLPASAQQG FTAAKTRWAL GEVGGKTGLQ QARVMPTICP
YCSMGCSIDM YTDGQRVIWS AGSTDSYINW GALCPKGKAA FQLVNNPRRL MYPLIRTGPK
PPVEEILAAK TWDELLAVLK KYPPQWRRAS WDEALSYIAG KLAGILNAWR TSTGAPKQSD
GFYYVGAKSP VMIIGSSILV NEEGYLSRKL AAFLGTSNTD SQYRKCHSST VSSLAVTYGW
GAETASIEDV ALADVVLFFS SPAEAHPLSF YYFMKGKRER DTIFITFDPR YSRTAAASDI
WVPFRPGTDT AIFNYILHYA FFERNPPIDQ LPEFQRLMAR WNITNDDLAD LKEMLKEYDV
DTASAITGVP KELLRTVAQI YVENSGVVTG HKKHGIVQWA MGFTQHTNAT INIIRAAAIT
QLLLGNVGYP GGGTHPFRGH SNVQGVTDVQ GGGLGVLPGY HSPPSSAFDV RLYQDWKLQG
MPDAWNWEIP QWAQGKVATS TPSRGKADLT KVLQVFNFYG WRRLELVWGV FCGTVPEDDP
VNGVVVCDLP FGTGASEVTF PRKALAGDIR AAFVFGENPA VSNPNAKVVM AGLASLDLLV
VSDIFETETA YFADVVLPAA SFAEKEGTRT DGNRVIQWTW RAVEPVGESR PDYWIMAQLY
KYLRRAGAVV LPSEAAGVKS ERVKFRKRGQ LIFVYERPLK PDRSWDYSGG SGEAAPISEI
EAAANPRIIS KEINYAVFIY QGIYDPVRDE FTPMRRNNRL RKPGEIDGTF SQEFKVYKDW
GWSWPMNVRF MYNYDSLQAV LGKADVVTAA GKQWTVTGET GEIIDEYTGE YRPAFVPGHN
FWAPRSFKRR LSGVSDLFGG LDIIEFIRTG QLVIPGKFVV EDGGEVKVLG FEEFAAATGM
RYLWANDAVY WDEEALSMKA ALKRPFYSGG GWAQFKPNYE KMRQLLQQYY QQTGDLRTAT
LKVIEEMGGW YKGYNFQWPI HTEPVESPLV EMALKYPTLA WTNPYNLDVL TNKPAAVKDF
PVGVALEPKQ LEDLLKQWGV ADAVIVAMTS NRLTETWHTG AMSRNVPYLA QLVPAPFVYV
PRALAQKLGI QSGDYVELWT ARGMLKMVAY VTDGEAYLNV NGKTVPVVNV QWSFSFMGDV
TGPQGNFLTP DVGDVVTTIQ ESKAWLGAIR KARSV
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