| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4218 |
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| Symbol | |
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| ID | 4176007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 5078106 |
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| End bp | 5080001 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638057254 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_663771 |
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| Protein GI | 109900516 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAATAA ACACATTATT TCACAGCGTG CTGACTCAAC GTGCTGCCAT TCAGCTGATG
TCAGTTACCT GTATTTTACT TTTTTTGGTC ACGGTTTTTT CAATTAAGCT GCAAACACCA
GAGTCACTGA CGAATAGCCA ATTAACTGTT CTCACCGATA CTCAACAGCA ATACAAAATC
AATACACTGC CAGATGCAAA CAGCCATCAA TGGAAGGCAG TTGATGGTTT TGAGCTTGGC
CTGCCCATGT CAGACACGCC CCATTGGCTG AGTTTTACGA TTCCCAATTT ACGCTCCAAT
GAACATTGGT TACTTGAGTT GAACAATGGA CTTATTGATC ACATCTCTGT GTGGTTTATT
GAAGAAGGCG AACTTCTCGA TCATTATCAA ACGGGCGACA CTCTGCCATT TGCATCTCGC
AGTATGCCCT ACGAAACGTT CATGTTTTCC ATCCCTAAAT TTGATGAAAA CTTACGTGTT
GTTATGCGAC TTAGCAGTGA TGGTACGTTA CAGGTGCCAA TCCATCTTTG GGCCGAGTCT
GCGTTTTTAG TATTCAATGG TGAGCACAGC ATCCTGATAG GGCTTTTCTT TGGCATCTTG
TTCGCCATGG GGATCAGTAA CTTGTTTTTC TTCGTGATCA GCCGCCAGCC TGTGTTTTTA
CTTTATGCAG GTTATGTATT CAGCTTTGCG CTGCTACTCG CTGCGATGCA AGGCATTGGG
TACAAGTATA TTTGGTCCGA CAGCCCATGG ATGCAAAAAC ACAGTGTGTC TATCTGGGCC
AATGCCACGG TCTTTTACGC GATCGTATTT ACCAATATTC TGTTAGATAT CAAAAGTATC
AGCCTGCGCT TGCACAAAAT TTTAAATGGG TTGGCCATTT TATTTGCTCT GAGCTTAATC
GCGGGCTTGT TTATTCCCAA ATCATGGTTT TTGGAACCCT TCTTATTTGC ACTTTGCGGG
ATAAGTTTGT TCATATACGC AGTCGGTATT TGGTGTTGGT ATAAGCAAGT CCATTTAGCG
CGCTTTTACA CACTAGCTTG GACATCACTG TTGGTCAGCT CCTTGATTGC CTGTCTTGAC
CACCTCAATG TGCTGACCCT GTCTATTTCA TCTAACTACT TGCTGATGCT AGGTGTCATC
ATTGAAACTT TCTTATTGGC TCTCATGCTA GCTTTGAGCG TTAATCACCA GCGCCGTCAG
TTGTTTAGAG CTCAGCGGGA AGCATTGCGT AAAGAACGAG ATATGCGTGC AGTGCAAGAC
GAAGTGCTCG AGCAGCAAAA CAACGCCCAA GAAGAATTGG AGTATAGCGT GCAAGAGCGC
ACGTTAGAGT TAGAGATAGC CCTTAGGGAG TTATCAGAAA TTAACCGCGA ACTAGAAGAA
AAGAACACGT TAGACGCGTT AACGGGTATT CGTAACCGGC GCTATTTTGA TAAGAAATAT
TTAGCGGAAG TGCGCCGAAG CCGCCGTGAG CGCACCGAAC TAGTTGTGGC TATGATTGAT
ATTGATCACT TTAAGCGCGT GAACGATGAG CATGGCCATC TAGTAGGAGA TGAATGTATT
AAGTTTGTCG CCGAGCGCTT GAAAAAAGCC CTTAAGCGCC CCAGTGATGA TGTATGTCGC
TATGGGGGAG AAGAGTTCTC TGTCATCTTG CCAAGCACCG ATATTAAAGG CGCTCAGGAC
TTACTCGAGC AGTTAAGGCT AGATATTCAA GACACCCCCG TTTATAGCGC GGGTGTGGTT
GTTAATTTAA CTGTGAGTAT TGGCTTAGCC AGCGCCATCA TGGACCCCCA GCAGAGTGAA
GATGTGTTAA TCGGCTTTGC GGATCAATTA CTTTACCAAG CTAAAAATAA CGGACGAAAT
TGCATCGTGG CGCAGCAGCT GCCGACCTCT GAATAG
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| Protein sequence | MAINTLFHSV LTQRAAIQLM SVTCILLFLV TVFSIKLQTP ESLTNSQLTV LTDTQQQYKI
NTLPDANSHQ WKAVDGFELG LPMSDTPHWL SFTIPNLRSN EHWLLELNNG LIDHISVWFI
EEGELLDHYQ TGDTLPFASR SMPYETFMFS IPKFDENLRV VMRLSSDGTL QVPIHLWAES
AFLVFNGEHS ILIGLFFGIL FAMGISNLFF FVISRQPVFL LYAGYVFSFA LLLAAMQGIG
YKYIWSDSPW MQKHSVSIWA NATVFYAIVF TNILLDIKSI SLRLHKILNG LAILFALSLI
AGLFIPKSWF LEPFLFALCG ISLFIYAVGI WCWYKQVHLA RFYTLAWTSL LVSSLIACLD
HLNVLTLSIS SNYLLMLGVI IETFLLALML ALSVNHQRRQ LFRAQREALR KERDMRAVQD
EVLEQQNNAQ EELEYSVQER TLELEIALRE LSEINRELEE KNTLDALTGI RNRRYFDKKY
LAEVRRSRRE RTELVVAMID IDHFKRVNDE HGHLVGDECI KFVAERLKKA LKRPSDDVCR
YGGEEFSVIL PSTDIKGAQD LLEQLRLDIQ DTPVYSAGVV VNLTVSIGLA SAIMDPQQSE
DVLIGFADQL LYQAKNNGRN CIVAQQLPTS E
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