Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4142 |
Symbol | |
ID | 4175931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4978485 |
End bp | 4979639 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638057178 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_663695 |
Protein GI | 109900440 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.93898 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACTTAA TTATTCGCTC TTGTAAAAAC GCCGTTGTTG TTATGTCATT ATTATTGACC TATGCCATAT TCGTGCCCGC CGTCTTCGCT CAGGAAAATA CAACTGAAGA GCCTCTAATG ACGCAGCCGT TGGATGTATG GGCAGATGTC ACTCATTTGT GGCACAACGT TGTGATGGCG TTACCTATGC TCACGCTGGG GTTGGTATTC TTTATTATTT GTTATGCCCT CGCGAGGCCC GTATCTACTT TGCTTGTAAG GCCTATCGGA TACGTAAGTC AGAGTGAATT GATTAGGCTT GTGACGCGGC GCACTATCAG CCTGCTAATT ATTTTACTTG GTCTGTATGT ATTCTTAAGA TTTGCAGGCT TAAGTGAATT TGCTATCGCG ATTGTCAGCG GCACGGGAGT CATGGGCTTA ATTCTTGGGT TCGCGTTTCG TGATATCGCG GAGAACTTTA TTTCGAGTTT GCTGCTAAGC GTGCAAAAGC CCTTTAAAAT TGACGATGTC ATTGAGGTAC AGGGGCAGTT AGGGATTGTA AAGCAAGTAA CAGCAAGGGC GACGACTTTA GTCGACTTCG ATGGTAATCA CATTCAAATT CCCAATGCGA CTATTTATAA AAATATTATA CGTAATCTCA CTGCCAACCC GAAAATGCGA GGCAAGTTCA CTATCGGTAT TGGATATGAT TCCAGTATTT TGGAGGCTCA ACAATTGGCC ACAAAGGTGC TTAGCTCGCA ACCTACCATT TTACAAGACC CCGAGCCTCA AGTATTGGTA GACGAATTAG GCTCATCTAC GGTGAACCTA AAGGTCTATT TTTGGATCGA TGCTCAGCAA TATAGCCTGC TTAAAGTGTC TTCAATGTTA ATGCGCTTAA TCATGCGCGA ATTTGAAAGA AACAATATCA GTATGCCAGA CGATGCGCGT GAGATAATCT TCCCTCAAGG TGTGCCAGTT CATCAAATAT CATCACAGGA GAGTGGCTTG ACTGATGAAC CTCAAGCCTT ACGCTCTTTG CCCGTTAACA AAGAAGCCAT TGAGCAAGAT AGCGATGCCA TCGAGCATCA AGATGATTTA AGCAGCGACA CCCATGACAT ACGCGAGCAA GCAAAGCAGG CTCGTGATCC AGAGCAAGGG CAAAACATTC TTTGA
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Protein sequence | MHLIIRSCKN AVVVMSLLLT YAIFVPAVFA QENTTEEPLM TQPLDVWADV THLWHNVVMA LPMLTLGLVF FIICYALARP VSTLLVRPIG YVSQSELIRL VTRRTISLLI ILLGLYVFLR FAGLSEFAIA IVSGTGVMGL ILGFAFRDIA ENFISSLLLS VQKPFKIDDV IEVQGQLGIV KQVTARATTL VDFDGNHIQI PNATIYKNII RNLTANPKMR GKFTIGIGYD SSILEAQQLA TKVLSSQPTI LQDPEPQVLV DELGSSTVNL KVYFWIDAQQ YSLLKVSSML MRLIMREFER NNISMPDDAR EIIFPQGVPV HQISSQESGL TDEPQALRSL PVNKEAIEQD SDAIEHQDDL SSDTHDIREQ AKQARDPEQG QNIL
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