| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3850 |
|---|
| Symbol | |
|---|
| ID | 4175630 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4645716 |
|---|
| End bp | 4647356 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056878 |
|---|
| Product | acetolactate synthase |
|---|
| Protein accession | YP_663404 |
|---|
| Protein GI | 109900149 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.780618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGT CAGATTTATT TGTTAAAGCC CTAGAGGCAG AAGGTGTTGA GTATATTTTT
GGTATCCCAG GTGAAGAAAA CTTAGATTTG CTTGAATCGT TACGAGACTC AGACATCAAA
TTAATCTTAA CCCGCCATGA GCAAGGCGCA GGTTTTATGG CGGCCACCTA TGGTCGATTA
ACCGGAAAAG TGGGTGTGTG TTTATCGACA CTTGGCCCCG GCGCAACTAA CTTGGTGACT
CCCGGTGCAT ACGCTCAATT AGGTGCAATG CCCATGTTGA TGATCACTGG CCAAAAACCG
GTGAAAACCA GCAAGCAGGG GCGCTTTCAG GTCATTGATG TTGTGGACAT GATGCGTTCG
ATTACTAAGT ACACCACACA GGTGGTCAGT GGTGATCGCA TTCCATCTGT GGTGCGTGAA
GCATTTCGTC TTGCTCATGA AGAACGCCCT GGTGCAACGC ATATCGAATT ACCAGAAGAT
ATTGCGGCAG AAACCACCCA AGCTCAGTTA CTTAAACCTA GCATTTCTCG CCGCCCCATC
GCTGAATACA AAGCGATTAA TAAGGCAATT GAAATGATAG AGGGCGCACG CTCTCCATTA
TTGCTTATTG GCGCGGCAGC AAACCGCAAA CTCACCTCCA AAATGCTCAA AGAATTCGTT
GAAAAAACCG GTATTCCTTA TGTCACTACC CAAATGGGTA AAGGCGTATT AGATGAATCA
CATGAATTGT TTATGGGTAA CACTGCGCTT TCCTCTGGCG ATTTTGTACA CCGAGTGATC
GATAGTTCAG ACTTAATCAT CAACGTTGGC CACGATGTCG TTGAAAAACC GCCGTTTTTT
ATGCAGCACG GTGGCCGTGA GGTGATTCAT ATTAACTTTG AGCCCGCTGC GGTTGACCCT
GTGTATTTCC CGCAGTTAGA AGTAGTGGGT GATATTGCGA ACAGTATCTG GCAAATAAAA
GAGCAAATTC AGCAGCAAAG TAATTGGGAG TTTAGTTTCT TCAAAAAAGT GCATCAGGCG
TATCTCGATC ATAAAGCGGA AAGCGAAAAT GACGATCGTT TCCCTGTTTT ACCTGAACGG
TTTGTTAAAG ACATCCGCGA AGCCATGCCA CGTGATGGCA TCGTCACTCT GGATAACGGC
GTGTACAAAA TCTGGTTTGC GCGCAACTAC CCCGCGGCAC TGACCAACAC CTTACTGCTT
GATAACGCCT TGGCCACAAT GGGCGCAGGG CTGCCCTCAG CGATGGCAGC GAAAATGGTT
CATCCTGATA AACCTGTGCT GACAGTGTGT GGTGACGGCG GATTTATGAT GAACAGCCAA
GAGTTAGAAA CGGCCGTAAG GTTGAATTTG CACATAGTCG TCATCATTCT AAGAGATGAC
GCTTATGGCA TGATCAAGTG GAAGCAAGCC AACATGCAGT TTGCTAACTA CGGTTTGGAT
TATGGCAACC CTGATTTTGT GAAATATGCA GAAAGCTACG GTGCGAAAGG CTGGAGAGTA
GAAGCGGCGG ATCAAATATT ACCGCTGGTG AAATCATGTT TATCTGAGCC TGGCGTGCAT
GTCATTGATG TGCCCGTTGA TTATAGCCTT AATGACCAAA CGTTGAACGA AACTCTCCGT
GAACGTAGTC AACAACTATA A
|
|---|
| Protein sequence | MKASDLFVKA LEAEGVEYIF GIPGEENLDL LESLRDSDIK LILTRHEQGA GFMAATYGRL
TGKVGVCLST LGPGATNLVT PGAYAQLGAM PMLMITGQKP VKTSKQGRFQ VIDVVDMMRS
ITKYTTQVVS GDRIPSVVRE AFRLAHEERP GATHIELPED IAAETTQAQL LKPSISRRPI
AEYKAINKAI EMIEGARSPL LLIGAAANRK LTSKMLKEFV EKTGIPYVTT QMGKGVLDES
HELFMGNTAL SSGDFVHRVI DSSDLIINVG HDVVEKPPFF MQHGGREVIH INFEPAAVDP
VYFPQLEVVG DIANSIWQIK EQIQQQSNWE FSFFKKVHQA YLDHKAESEN DDRFPVLPER
FVKDIREAMP RDGIVTLDNG VYKIWFARNY PAALTNTLLL DNALATMGAG LPSAMAAKMV
HPDKPVLTVC GDGGFMMNSQ ELETAVRLNL HIVVIILRDD AYGMIKWKQA NMQFANYGLD
YGNPDFVKYA ESYGAKGWRV EAADQILPLV KSCLSEPGVH VIDVPVDYSL NDQTLNETLR
ERSQQL
|
|---|
| |