| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3795 |
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| Symbol | |
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| ID | 4175575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4569680 |
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| End bp | 4572322 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056823 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663349 |
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| Protein GI | 109900094 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAAA CTAACACCTG CCAGTTTAAA AAGAACCCCA TCGCACTCTT AATTTCGCTC
ACCTTGGGTT TTCCCATTCC CATCGTTAGC GCACAAGAAA TCGAAGAAGA AGTAGAAACA
CTTCGCCTAG AAACCATAAC TGTTGAAGCG CAAAAGCGTC GTCAAAGTAT GCAGACGGTG
CCTGTTTCAG TTAGCGCCTT TTCCGGTAAG CAACTTAACC AAGCTGTGCT CAAAGATATT
TTTGATGTCG CTAGTATGGT GCCTGCCTCC TCTGCGTTTC AAACCCAGAA TGTGACCAAC
ACCAGCTTCT CGATACGCGG TATAGGCACC TCGTCACAAA ATTTTGGTTT GGACCCATCG
GTGGGGCTTT ACGTTGATGG TATTTATCGC GCGCGCCAAA GCTCTATGGT CAACAATTTA
GTGGATATTG AAGCTGTGGA AGTTCTTCGC GGCCCTCAAG GGACACTGTT TGGAAAAAAT
ACGCCTTCAG GCGCAATACT GATCCGTTCT GTTGCACCAA GCCACGATGG CGCGAATAAT
TTTATCGAAG GTACAGTCGG AAATTACGGT TTAATTAATT ATTCCGCTGC GGCGTCCCTG
TCTGCGATTG ACAATGTACT GGCATTGCGC GTGACAGGTT TTGGTAGTCA ACGTGATGGT
TTCGTTAGCG AAGTCAACTC AGGAAGTGAC GTCCTAAATG ATCGAGATCG CTGGGGTGCG
AGACTTCAAG CCTTATATAC CCCGAGTGAC GATGTCACTC TGCGCATTAT TGCTGATTAT
GCAAAAATTG ATGAAATTTG CTGCGCCGCC CCAGTACAAG TCAGTAATGC TCAAGCCACT
GGTATAGAAG GTAAATTTGG CACTGACCGT CTCCTATCTC AAGCGCCGTT TAATGCCACT
ATATTTGATG GCAGTGACTT TTTTGATCAC AAAGTCGCGC TGTCATTCTT ACCTGAGTCA
CAGGTAGAAG ATAGCGGGTT GTCAGCTGAG TTAAATTGGA ATATCAATGA GCAATTTACC
TTGGTGTCTA TTTCCGCTTA TCGTAATTTC GACTCCTATG ACAACATAGA CAGTGACTTT
ACGGATGTTC ATTTGTTTGG TACCCGAAAT GACTCACAGC AAAATTCGTT CTCCCAAGAA
TTACGAATCG ATTACACCAG TGACCTCGTC ACAGGGATAC TCGGTGCTTA CTATTTTAGG
CAAGACCTGG ATCTCGATTA CAGCTTGTAC ACGGGCGAAC AATTCAATGA CTTTTTTCTG
GCAGGCTTCG CACAAGGAGC ATTTAATGAT CTGCTCGCTG GCATTGATGC CTTGAGCATT
GCAACCAATG GCCTTGTTGC AGCGTCGGCA TCACCCGCCC CTGCATCGAC CAGCTTTGAT
CACCGCGCAG AGCAAAAACA TGAAAGCTAC GCTATTTTTG GTCAAATCGA CTACCAACTT
TCCGAAACGC TCACCCTAAC CACAGGTTTA CGTTATACCG ATGAAAGTAA AGATCTCTCG
ACTATTTTTA GTGAAGTGTT ACCCGCAGAT TCGGTCTTTC CAACCTTCTT TACCTCGGTT
GGTGATCCAG CAGACCCTGA GTCAATTGTG CCTGGGTCAC TACTTTACGG TGCAGGTTTA
GCCGGTAACG TCTTGGCGGG CATTCAAGCC AATACGATTG ATATTACAAC GGCTAACGGC
CAGGCAGCAC TGGCTGCTCT GGCCCCGTTT CAAACGCTGG GTTGGGGGTT CAATCCTCTT
GGCGCCATTA CCGCTGCTCG CTCAGATATT TCTGATACCT TAGATGATGA CCAAATAACC
GGCACGCTGA AACTCAGCTA CACCCCAAAT AGAGACACGC TCATGTATGT TTCATACGGT
ACTGGTTATA AGTCTGGGGG GACCAACACT GATCGAATTA CAGAAGGTTT CGACCCTATA
TTCGCTGCTG AGAAATCCAG ATCGCTGGAA ATTGGTATCA AGAAAGACTT TCCGGAACAA
GATCTTAGGG TTAACGCCGC AGTACACTCA ACCAACGTTG ATGACATTCA AGCGAATACA
TTTACCGGCA CAGGTTTTAA CCTACAAAAT GCAGGGGATT ACAAAACCTC TGGTTTAGAA
GTAGAGCTAA CGTGGCTGCC AACAGATACC ATTGAAGTCG GTTTTGTGTA TGCCAGAGTC
AACGCAGAGT ATGACAACTT TATGCGCGGC AATTGTTGGA TAGCCTACAC GTGGCACACA
GGTATTACCG ATCCTGGGCA AGAAGTTTCG GAATCGGGTG CGCCAAATCC TTATTGCGAT
CGCTCTGGTG ACCGCCCAAC TGGCGAGCCA GAAGACTATG CCATGTTAAG AGTGAAAAAG
GATTTCACCA TTAGTGATGG CATCGATGCC CATATCGTAG CTGAATACTC TTACACGGGG
GATGTCGTTT TAGATGGCAG TAATGACCCG TTCGCCGTGC AAGACTCATA CAACTTGCTT
AACTTGCGTT TCTTTATGAA TTTCGCGAAA TACGATATGG ATTTGGTTTT CTGGGGTCGC
AATGTGTTGG ATGAAGAATA TATTAACCAT GTGAATTTTA ATACGCCTCT GCAAGAGGGT
AAATTTAACG CTTATATTTC TGACCCTGCT ACATTTGGCA TCACACTGAG AAAGCGCTTT
TAA
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| Protein sequence | MDKTNTCQFK KNPIALLISL TLGFPIPIVS AQEIEEEVET LRLETITVEA QKRRQSMQTV
PVSVSAFSGK QLNQAVLKDI FDVASMVPAS SAFQTQNVTN TSFSIRGIGT SSQNFGLDPS
VGLYVDGIYR ARQSSMVNNL VDIEAVEVLR GPQGTLFGKN TPSGAILIRS VAPSHDGANN
FIEGTVGNYG LINYSAAASL SAIDNVLALR VTGFGSQRDG FVSEVNSGSD VLNDRDRWGA
RLQALYTPSD DVTLRIIADY AKIDEICCAA PVQVSNAQAT GIEGKFGTDR LLSQAPFNAT
IFDGSDFFDH KVALSFLPES QVEDSGLSAE LNWNINEQFT LVSISAYRNF DSYDNIDSDF
TDVHLFGTRN DSQQNSFSQE LRIDYTSDLV TGILGAYYFR QDLDLDYSLY TGEQFNDFFL
AGFAQGAFND LLAGIDALSI ATNGLVAASA SPAPASTSFD HRAEQKHESY AIFGQIDYQL
SETLTLTTGL RYTDESKDLS TIFSEVLPAD SVFPTFFTSV GDPADPESIV PGSLLYGAGL
AGNVLAGIQA NTIDITTANG QAALAALAPF QTLGWGFNPL GAITAARSDI SDTLDDDQIT
GTLKLSYTPN RDTLMYVSYG TGYKSGGTNT DRITEGFDPI FAAEKSRSLE IGIKKDFPEQ
DLRVNAAVHS TNVDDIQANT FTGTGFNLQN AGDYKTSGLE VELTWLPTDT IEVGFVYARV
NAEYDNFMRG NCWIAYTWHT GITDPGQEVS ESGAPNPYCD RSGDRPTGEP EDYAMLRVKK
DFTISDGIDA HIVAEYSYTG DVVLDGSNDP FAVQDSYNLL NLRFFMNFAK YDMDLVFWGR
NVLDEEYINH VNFNTPLQEG KFNAYISDPA TFGITLRKRF
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