| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3643 |
|---|
| Symbol | |
|---|
| ID | 4175423 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4390339 |
|---|
| End bp | 4391577 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056673 |
|---|
| Product | natural resistance-associated macrophage protein |
|---|
| Protein accession | YP_663199 |
|---|
| Protein GI | 109899944 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
|---|
| TIGRFAM ID | [TIGR01197] NRAMP (natural resistance-associated macrophage protein) metal ion transporters |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.145249 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGCAT TCATTAGAGC TATTCTGAGT TTTGGTCCAG CGTTTTTAGC CATTGGCTAC
ACCATTGGCA CTGGCAGTGT GACGGCAATG ATTGTCGCAG GCAGTACCTT TGGCATGCAG
CTGTTATGGG TTTTATTGTT AAGCTGCTTA TTTTCAGGGG TGCTTATTTA CGCCTACGGT
AATTTTGCCT TGGTAACAGG AGAAACCGCG CTTTATAGTT TTAAGAAACA CCTTAAATTC
GGTAAGGTGA TTGCGATCCT CATCATCATA GGCGTGTCCT TTGGTCAGTG GAATTCCCTG
ACCGGTATAT TAGGGATTTC CTCCAATATT TTATTTGAAA TGATCGCCTT GTACTTCCCC
GCTGTGGTTC CGCACAAGTA TGCTGTAGTA GTAACAATTG CTGTGCTCGT TATCAGCATT
ATGTATGCAA TATTACTCAT AGGTAAGTAC TCATTATTTG AAAAGATACT GGTAATTTTT
GTGTCTTGCA TGGGGCTATC TTTCATATTG TCGCTGTTTG TTGTGCACCC CATGCCCGCA
GAAGTCGTAC GCGGACTTAT CCCCGTTATA CCTGATGTCG TCGGCGGAAA AATGATGGTG
GCTGCATTTG TAGGAACCAC CATGGCCTCG GCGACGTTTT TGTCTAGACC TTTATTTATT
CAAGGCAAGG GCTGGGGTAT TGCTGACAGA GCACAACAAA AGAAAGATGC GATTGTTGCC
GCAGTACTGG TGTTTATTAT TAGCGGCTCA GTTATGGCCG TCGCCGCAGG GGCCTTGTTT
CATGAAGGAA AACCAGTGAC CGACGTGCTG GATATGGTGA ATGCCCTTGA ACCCATAGCA
GGTAAATTTG CCCTGACGGT ATTCTTTTTC GGTACGCTCG CAGCGGGTTT GTCGTCAGTG
TTCCCTTGTA TGTTGATTGC CCCACTGTTA ATTGAAGATT ACCGCTCGGG TAAATTAGAC
ACACAATCTA CGCAGTTTCG TATTATCACA GGTCTCGCTG CGTTATTTGC CCTCACGATC
CCAGTATTCG GTTTTAACCC TGTTAAAGGA CAGTTATTAA CCCAAGTCTT TAATGTATTT
GTTCTGCCAT TGGTTATTCT AGGGATCATT TTAATGATCA ATAAGAAGAA GATGATGGGT
GAGCATGCCG CGGGATACTT ACTCAACATC GTATTAGGCT TAGCGTTTAT GTTTTCAATT
TTGATTTCAT TTAACGGTAT TCTTGGCTTA TTAGAATAA
|
|---|
| Protein sequence | MSAFIRAILS FGPAFLAIGY TIGTGSVTAM IVAGSTFGMQ LLWVLLLSCL FSGVLIYAYG
NFALVTGETA LYSFKKHLKF GKVIAILIII GVSFGQWNSL TGILGISSNI LFEMIALYFP
AVVPHKYAVV VTIAVLVISI MYAILLIGKY SLFEKILVIF VSCMGLSFIL SLFVVHPMPA
EVVRGLIPVI PDVVGGKMMV AAFVGTTMAS ATFLSRPLFI QGKGWGIADR AQQKKDAIVA
AVLVFIISGS VMAVAAGALF HEGKPVTDVL DMVNALEPIA GKFALTVFFF GTLAAGLSSV
FPCMLIAPLL IEDYRSGKLD TQSTQFRIIT GLAALFALTI PVFGFNPVKG QLLTQVFNVF
VLPLVILGII LMINKKKMMG EHAAGYLLNI VLGLAFMFSI LISFNGILGL LE
|
|---|
| |