Gene Patl_3631 details

Gene Information

• Locus tag: Patl_3631
• ID: 4175411
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 4372109
• End bp: 4373995
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638056661
• Product: diguanylate cyclase
• Protein accession: YP_663187
• Protein GI: 109899932
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATCAAGG TTATATGGAT TTGTACTGTA TTGATTTTTT GGGTGCCGGT GAAAGCGTTT 
GCGGCCCAAG CTGTGGTGTA TAGCTTTTCA GATGAATACC AATCCCTCAC GTCAAGATTA 
ACCACTGCGC CTCAACAAGT CTTAACACAG TTAATAAACT CAGCGCCGCA ACATGAGGCA 
AGTAACGTGG TTAAAGCTGA GTACTATGCC ATTTTAAGTG ACACTTACTA CGCGCTAACG 
TATCCGCAAA AAGCAATTGA GAGCGCGCAA CAAGGTCTGA GTTTTATCAC CGAAGAGTCA 
GAACCTTGGT TGTACCATAA TTTGAAATTA ATCGAAGCGA CAGCGATAGA GATGGCGGGT 
GAGCCCATTG ATGCGTTGTT GGCTGTCAAT AAAGCGGTGG CGTGGGCAAA AGATAACCAC 
AGCGAAGCAA CATATATACT CGGTTTATAT GTTAGAGGCT TGTTATTTAC CTCGTTAAAT 
GAGTATAGCG GCGCTGCAGA GAACTTCTTA GAAGCCTACA GTTTGTCTAC CCAATATACC 
GGCAAAATTT CCAAGGCTAA TATTGCCGGC ATGATTGGGG TTATGTACGA AAATCGCGGT 
GATTATAAAC TGGCGATCCC CTATTACGCC GAAGCTGTTG CCCACGCACG TAAAAATAAC 
GAACCCCTGA ATTTAAGCAT CGTATTGTTT GGTTTAGGCT CAGCTAATTT TGGTGCCGGT 
AATATTGATT TAGGCGAAAC GCAACTTATT GAATCCGCGG ATATTGCACG CTCATTGGAT 
GACTCCCAAG GGGTTGGGTA TGCGCTCAAG CAGTTAGCAA AAATCAGTAT AAAGAAACAA 
GACTACGCAT TGGCCGAAAA GCGTTTGAAA AGAGCAGCTG ACATTTTTGC TGAGAGCGAA 
AATAGACCGA TAGATTTTCA GATTTCAAAA AGTTTGTTTG AAGTGGCTTT AGCGACAGGG 
GAACTCGAAA AAGCCGAGCA ACATCGTGAT AGCGCAAAAG AATATTTAAA TCCTGCCACC 
ATGCCTAGCG ACACCATAGA GATAGAGCAA CTCGAAGCTG AGTTAGCAGC TGCCCAGGGG 
GATCTAGCCG CGGCTTATGC ACACATGCAG CACGCCCTAA CCTTGAGTAG TGAATATCAT 
GCGACCAGAA ACTCTGAACA ACTTCATCGT TTGCGAGCCA TTTATCGCGT GCGCGCCTCA 
GAACAGGAGA ACAAGATACT AGAGCATCAA AATCGTTTGC AGCGTTTTGC GCTTAGTGCT 
CAAGAGCAGC GCAATATTTA TTTGTGGGCG TTTCTGGGTA TTGTGTTGGT AGTGTGTTGT 
TTATTAGCTG TGATGGTTTA TCGGGTCAAG GCGCAAAGTA GGGCACTTAC AAAACTTGCG 
ATCACAGATG ATCTAACCGG CTTGTACAAC AGGCGTCACA TTATCGAGCA GCTTGAGCGA 
CAAGTACATG CAGCGAACCG CTACAAGTAT GATTTGTGTG TCGCGATTAT CGATTTAGAT 
TTCTTCAAGA AGATCAACGA CAGCTATGGC CACGCAGTGG GCGATCGTGT GTTAATTGAA 
TTCAGTGATA TATGCAGTAA AAATCTACGG CAGTCCGATA TTATCGGGCG TATTGGCGGC 
GAAGAATTTT TGGTCATTTT ACCGCACACC AATTTGCAAG ATGGGTATAA TGCACTAGAC 
GGTTTACGCC ATAAAATATC TATGGTGAAT AATGTGGTTG ATATCAAAGA TTTATCCATC 
AGTGCTTCAA TTGGTTTGAC CTTCAATACC GATAGCCGAG AGAGCATGCA ATTAATGGCC 
GATGCCGATA CCGCACTTTA TCAAGCCAAA ACCCAGGGAC GCGATCAGGT CGTGATCCAT 
CCACAGAGCA CGCCAGTTAA TTCGTAA 

 

Protein sequence

MIKVIWICTV LIFWVPVKAF AAQAVVYSFS DEYQSLTSRL TTAPQQVLTQ LINSAPQHEA 
SNVVKAEYYA ILSDTYYALT YPQKAIESAQ QGLSFITEES EPWLYHNLKL IEATAIEMAG 
EPIDALLAVN KAVAWAKDNH SEATYILGLY VRGLLFTSLN EYSGAAENFL EAYSLSTQYT 
GKISKANIAG MIGVMYENRG DYKLAIPYYA EAVAHARKNN EPLNLSIVLF GLGSANFGAG 
NIDLGETQLI ESADIARSLD DSQGVGYALK QLAKISIKKQ DYALAEKRLK RAADIFAESE 
NRPIDFQISK SLFEVALATG ELEKAEQHRD SAKEYLNPAT MPSDTIEIEQ LEAELAAAQG 
DLAAAYAHMQ HALTLSSEYH ATRNSEQLHR LRAIYRVRAS EQENKILEHQ NRLQRFALSA 
QEQRNIYLWA FLGIVLVVCC LLAVMVYRVK AQSRALTKLA ITDDLTGLYN RRHIIEQLER 
QVHAANRYKY DLCVAIIDLD FFKKINDSYG HAVGDRVLIE FSDICSKNLR QSDIIGRIGG 
EEFLVILPHT NLQDGYNALD GLRHKISMVN NVVDIKDLSI SASIGLTFNT DSRESMQLMA 
DADTALYQAK TQGRDQVVIH PQSTPVNS