| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3548 |
|---|
| Symbol | |
|---|
| ID | 4175327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4264442 |
|---|
| End bp | 4265902 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638056577 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_663104 |
|---|
| Protein GI | 109899849 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCT CCAGTAAACT CCTGCTTATC GTTGTGTTGA CCATTTTCGA AATAACGCTC
ACGCTATTTT CGATACTTGA GATCTCCAAA GGCGCCAAGT TTCATCAGTT GAACTCCTTG
CATCTTAAGT ACACCGTTCA ATTTTCAACA TATATTTCGA CGTTGGAAAA AGACCAAGTA
GATGAAAGAG AAAGTGACCT AGAGCAGTTG CGGATGGCAG TCAAAAATGT TCGCCAGCAA
CCCACTGAAT GCTTAGATAC CGTGGATTTT GTCAACGGTT TTATCATGCG CCAAATAGGT
ACTTTCCACG CAGTAGAAAT ATGTAAAAAA GATATCAATG ACGCCAATTT TGCATTGAGC
GTTATCGATA ATTACGCTCA AGGTTTGATA GAGCGTGACA CCTTTATTAC TGATCTGAGA
GACGTTGCAC TGAGATTTAA TCGAAACTCT GCGGATTTTG AGAAGCCAGT TGCAGATACT
GTATCTTTTG TTATGCGCAC TATGATCCCT TTTGTTATCT GTATTTCCTT GTTTAATATC
CTCTTTATTA GTTACATGTC GAAAACGATT TCTTCTTCTA TCCGAAACAC AATTAAATTA
CTACGACGCA CTGACGACAC GCAAATTCTG TTTGAGCAGA TAGAAAAACG TACACCAGGA
GAGCTGAAAA CACTGTTAAA AGTCGCTAAA AAACGTATTG CTAATGAAAT GCTGACTGCC
CAGATTAACC AGAAGCTCGA ACGCCTAGTA GAAGAACGCA CAAACAGCCT TTTACGAGCA
AATGATGAGT TAGCACAATT TGCATATCGG GCTTCTCACG ATCTTAAAGC ACCGCTCACC
TCATCAAAGA TGCTGACCCA GTTTATTGTC GAAGACATTG AGAATGGCAA CTATGCCAAT
GCCATCATTG ATACCAATAA AATTCATGAT CAAATGGAGC GTCTTGAGGC TTTGGTAATC
GGTATTTTGT CGTTGACTTC AGCAGATGCA GAAAATGGTC ACTACTCTAA TATCTCATTG
AATGCGGTCG TAGAATCAAT AGAGCAGAGA CTTTTTGGAC CTGAAAATAT CTCCAAGGGA
TTTGTTCACT TAAAAGACGA CATGACCCAG CCGCTATTCA GTGACGAAGT GCGTATTGTG
CAGATATTAG AGAATTTGAT ATCAAATGCG TGGAAGTATC GAGATGACTC TAAAGAGACT
GAGCCATATG TGAAGGTATC GTCACGCTGT GTAAAGGGTG AATACCAGAT AGTGGTTGAA
GATAACGGTT TAGGTATTCC AAGCGCTCGA AAAGATGAAA TTTTTCAGAT GTTCAAACGT
TTTCACCCCA AGGTAAGTTC AGGTTCAGGC TTGGGCCTAG CGATTGTGAA GAAACATGTG
GAAATTTTAA AGGGGACCAT ATCGGTAGAG ACATCAGAGC GTGGCACCTC TTTTGCTATT
ACATTGCCTA AACAGGTGTA A
|
|---|
| Protein sequence | MKISSKLLLI VVLTIFEITL TLFSILEISK GAKFHQLNSL HLKYTVQFST YISTLEKDQV
DERESDLEQL RMAVKNVRQQ PTECLDTVDF VNGFIMRQIG TFHAVEICKK DINDANFALS
VIDNYAQGLI ERDTFITDLR DVALRFNRNS ADFEKPVADT VSFVMRTMIP FVICISLFNI
LFISYMSKTI SSSIRNTIKL LRRTDDTQIL FEQIEKRTPG ELKTLLKVAK KRIANEMLTA
QINQKLERLV EERTNSLLRA NDELAQFAYR ASHDLKAPLT SSKMLTQFIV EDIENGNYAN
AIIDTNKIHD QMERLEALVI GILSLTSADA ENGHYSNISL NAVVESIEQR LFGPENISKG
FVHLKDDMTQ PLFSDEVRIV QILENLISNA WKYRDDSKET EPYVKVSSRC VKGEYQIVVE
DNGLGIPSAR KDEIFQMFKR FHPKVSSGSG LGLAIVKKHV EILKGTISVE TSERGTSFAI
TLPKQV
|
|---|
| |