Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3410 |
Symbol | |
ID | 4175187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4083105 |
End bp | 4085450 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638056441 |
Product | TonB-dependent receptor |
Protein accession | YP_662970 |
Protein GI | 109899715 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACAA CCGCTAAAAC ACACTTAGCA CTTTGCATTG CTATGGCCAT AGGTAGCCAA TCTTTTATTA GCTCAGCAAT TGCTCAAGAA ACACCAGACG ATGCTGCGAT TGAAGAAATC ACGGTTGTGG GTAAAAGCGT TTCTTACGCA AACAACCAAA CGTCTGATGA GATGGCAAAG CAGCAAAGCT CGTTGACCAG TGCCCTTGCG GTGATTGATA ACCTACCGGG CGTGTTGATC AACGAAGGGG ATACCTTTGG CTCAGATGAT TGGTCTACCA CTGTGTCTAT TCGCGGTTTT CAATTAAGCC TAGATGAGCA GCAAATCGGT ATCACCATTG ATGGTATTGC TAACGGTAAC TCAAACTATG GCGGCGGTGC TAAGGCTAAC CGTTACATCG ACACCGAAAA CTTGGGCCGA GTTGAGGTAT CTCAAGGGAC CGGTGATATT GCATCGCGTT CTAACGAGGC CTTAGGCGGT ACGCTTAACT TCACCACCAT TGACCCTGGC ATGGAAGAGT CCATGGTGGT GAGTATTTCT GCTGGTAGTT TTGATGCGCA GAAGTACTTC GTGCGCTACG AAACAGGCGA AATAGCACCT GATACCTACG CATGGTTCAG TGCGTCTAGC AGCGAAAACA CTGATTGGGT AACCCAAACC GCTGAGAATA AACGTGACCA TTTAGCGGCT AAGTTTATGA CGGTAGTGAG CGACGTTGAT ATCAAAGGGT ATTTCTCGTG GGATGATGTG CACGAAGATA ACTACCAGCG CGTCAGTCTA GCCCAGTTTG AACAAAACCC TGAGTCAGAT GGCTTGTCGG GTGAGTGGGT GGGCATTCCT TATGTGGATC AGGTTTTTCG TCAGGCTTGG TCAAGCTTAC GTGAAAACAT GTTTGCCTAT TTAAGTGCTG ATTATAAAGC GGATAACGTT GAGATATCGG GCAATGTTTA TTACCACGAC AACGAAGGCC GTGGTGATTG GGCTCCTCAG TACATTGTTG ATGTAAAAGA GGACGGTGAT GGCGTGGCGC ATTCAGAGCT TTCATCGGGG AATACCGTTT ACGGTGGTAG TGCGATCCGC GAGCTTTTGT TTGTTAACGC CAGCGGATTA GCCGTTAGCC CCATTGCCGG TTGTGAAAGC ACGATCACCG CGCCGTATGG CGGTGCAGGC CCAGAATATG ACCCAGGTTG TTATGCACAA GGTGCAATCC CCGTTGGTTC ATACCGCCAC ACTCATTACG AGAAAGAGCG TTTCGGTTTT GACGCAGATT TTGCGTGGTA CACACAAATA AATGATATGG ATAACACCTT ACGTGGTGGT ATTTGGTACG AAGATTACAA CCGTAAAGAA TCACGTGATT GGCACAAAAT TCTAGATTCT CGCTCAAGCT TTGAATTCGA CCACACGCCT TATTGGGTGC AGTACGAACG TGAGTTCCCA GTAGAAACTT TAATGGTTTA CGCAGAAGAC GAGCTAGACA TGGGCTGGGC CAGTATTCGC TTAGGCATGA AACGTTTCTT CGTTGATTTA GAGCGCCAAG ATAACTTTGA CGCTGCTAAC AAAGCAGAGC TCAATTCTGA CTCAGACACG CTATTCTCTG GTGGTATTGT GGCGCAAACG CCAATTGATG GCTTAGAAGT CTTCGCCGGT TACGCTGAGA ATTTTGCCGC GATTAAAGAC ACAGTGCTTG AGCGCGACGC TTCAACGTTG ACCCAAGTTG AACCTGAAAC CGCTGAAAAT GTGGATGTGG GTTTACGTTA CGTATCACAA AATATCAATG CGAGCTTAAC CTACTACAGC ATCAAGTTTG ATAACCGCTT AACCTTTATC GCCCCTGATT CGCCAGATGG TATTGATTAC CTAATCGGTA CTAACGGTAG CTACGTTAAC GTGGGCGGCA TCGAGTCTTC AGGTTTTGAA GCGTCATTAT CATTCAATGT GACCGATGAA TTGTCAGTGT ATAGCTCATA TACCTTCAAC GATTCAGAGT ACACAGATGG TTCAATCGAC TTCCCTGAAG GTAACACCGT ATTTGGTTCA CCTGAGAATA TGGCAGTTGT GTCACTTGAT TGGACACGGG GAAACTACTT CATAGGTTCG TCAACCAAAT GGGTAGATGA CCGTTTCATC GATGCTGCTA ATACCCAAGT GGCAGAGGCG TATTTAGTCA CTGATTTTTA TGCCGGAGTC AGCCTTGATG CACCTATTCA AGGTATTGAT TCAATCGACT TACGCTTCAC CGTAAATAAT ATGTTTGACG AAAGTTACTT GGGGGGTATT GCAGGTCAAT CAGCTTGGAT TGGCGCACCG CGCACCGCTG CATTTAACGC ACAAGCACGT TTCTAA
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Protein sequence | MKTTAKTHLA LCIAMAIGSQ SFISSAIAQE TPDDAAIEEI TVVGKSVSYA NNQTSDEMAK QQSSLTSALA VIDNLPGVLI NEGDTFGSDD WSTTVSIRGF QLSLDEQQIG ITIDGIANGN SNYGGGAKAN RYIDTENLGR VEVSQGTGDI ASRSNEALGG TLNFTTIDPG MEESMVVSIS AGSFDAQKYF VRYETGEIAP DTYAWFSASS SENTDWVTQT AENKRDHLAA KFMTVVSDVD IKGYFSWDDV HEDNYQRVSL AQFEQNPESD GLSGEWVGIP YVDQVFRQAW SSLRENMFAY LSADYKADNV EISGNVYYHD NEGRGDWAPQ YIVDVKEDGD GVAHSELSSG NTVYGGSAIR ELLFVNASGL AVSPIAGCES TITAPYGGAG PEYDPGCYAQ GAIPVGSYRH THYEKERFGF DADFAWYTQI NDMDNTLRGG IWYEDYNRKE SRDWHKILDS RSSFEFDHTP YWVQYEREFP VETLMVYAED ELDMGWASIR LGMKRFFVDL ERQDNFDAAN KAELNSDSDT LFSGGIVAQT PIDGLEVFAG YAENFAAIKD TVLERDASTL TQVEPETAEN VDVGLRYVSQ NINASLTYYS IKFDNRLTFI APDSPDGIDY LIGTNGSYVN VGGIESSGFE ASLSFNVTDE LSVYSSYTFN DSEYTDGSID FPEGNTVFGS PENMAVVSLD WTRGNYFIGS STKWVDDRFI DAANTQVAEA YLVTDFYAGV SLDAPIQGID SIDLRFTVNN MFDESYLGGI AGQSAWIGAP RTAAFNAQAR F
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