| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3312 |
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| Symbol | |
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| ID | 4175089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3973527 |
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| End bp | 3974438 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056343 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_662872 |
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| Protein GI | 109899617 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00186947 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGTGGC CTAATCTTAA ACACCTGCAT TATCTTGTTA CCTTGCACCA AGAGCAGCAT
TTTCACCGAG CTGCTGATCA TTGCCATGTA AGCCAATCCA CATTAAGCAC TGCCATTCAG
AATTTAGAAG AGCAGTTTGG CTGTCAATTA CTTGAGCGTG AACACAAAAC CTTTGTTTTT
ACGCCTTTTG GATTGGAGCT AGTTGAGCGC AGCCGTCGGT TGTTAAATGA AGCCAATGAG
CTGGTAGATT TCGCCCAAAC GGCCGGGGAT TGGCAATCTG GTAATTTGAA AATAGGCGTG
ATCCCTACCA TTGCGCCGTT TTTTTTCGAG GGTTTGATCA GTGCAGTGCA ACAAAACTTA
CCTGGTATCA CGTTGCAGCT TCAGGAAGAC ACCACCACTA ATTTACTCAG CCAGTTAAAT
GAAGGTATTT TGGACTTACT GATTTTAGCC TTGCCCATGG AAACCCCAGG CTGCAAACAG
TTGGTGATTG GCCATGATCC GTTTCATCTG ATTGCCCATT CTGATTTAGT GGATACTTTG
CCAATGCCTA TGGATGTTTC TGCATTGCCA GCCAAAAGTG TCTTTTTGCT GCAGCAAGAG
CATTGTATGA CCGGTCACGC GGTAAGTGCG TGCAACTTAC GCCATAAAGA GCAAGTCAAT
ACACTTGCCG CCAGCAGTTT GTACACCCTA GTGCAGCTTG CCAACAGTAA GCTGGGCTTT
ACCTTTATGC CTGAATTAGC CATACAGAAT CATATTCTGA GTACTTCAAA ATTGGTCTCG
CTACCGGCAG AAGACAGTGC ATATCGTGAA ATTGGCCTTG TGTGGCGCAA TGCAACCACA
CGTGTTCGCT TGTTTCGCTA TTTAGCTGAA TTGCTAGCGC CTTTGACACC AATCCCCACC
TTGAAAAAAT AA
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| Protein sequence | MKWPNLKHLH YLVTLHQEQH FHRAADHCHV SQSTLSTAIQ NLEEQFGCQL LEREHKTFVF
TPFGLELVER SRRLLNEANE LVDFAQTAGD WQSGNLKIGV IPTIAPFFFE GLISAVQQNL
PGITLQLQED TTTNLLSQLN EGILDLLILA LPMETPGCKQ LVIGHDPFHL IAHSDLVDTL
PMPMDVSALP AKSVFLLQQE HCMTGHAVSA CNLRHKEQVN TLAASSLYTL VQLANSKLGF
TFMPELAIQN HILSTSKLVS LPAEDSAYRE IGLVWRNATT RVRLFRYLAE LLAPLTPIPT
LKK
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