| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3248 |
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| Symbol | |
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| ID | 4175025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3897940 |
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| End bp | 3899241 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056279 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_662808 |
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| Protein GI | 109899553 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGTAT TTTGGATAAC GGGGATCGTT TTGTTACTCG TAGCGGCGGG TTTCGTTGTA
TTTCCCTGGT TAGTAGAAGG GCGAAAACGC CAAGATACAT TGACTAATAC CCGTTTAATT
CGGCAACGCT TGATTGAGCT GGAACGGGAA GAGCACGAAG GCTTGCTAAG TCATGAAGAC
CGATTAGAAA CAGAGAAAGA TCTGAAAATT GCTTTACTCG ACGAGCAAGA CTCACAGGCT
CAGAATGCTA CCTCCGCTCG CGGTGTATTG CTTATTGGTG GTTTGCTAAG TGTGGTCACA
GTCGCTGTAT TGTACTTTCA GGTGAACAAT GTATCAGCAT TGAATAACTG GCAAGATGCC
AAAGCACAGC TACCGGAATT GGCTGAGCGC ATTGTGACGC AAGGTGACGC CTCAGTCACC
GAAGAAGATC TGCAGCAGTT CGCGCTGGGG TTAAGAACTA AGCTTACTAG CAGTGAAAAT
GATGCCATAG GTTGGACGCT ACTTGGCCGT GTATATGTGG CTACTAATCG TGTTGAAAGC
GCGATGGATG CCTTTGAGCG AGCACTTGCA ATTGAACCTG ACAATGTCGA AACGCTAGCC
AGTTACAGCC AAATGCTATT AATGGTGAAT CAAGAAAGTT ATCTCGCACA GGCAAAAGTG
TATTTGAATC GCATATTACA GTTGGATCCA CAAAACACCG GGGCATTGGG TATGTTGGCG
ATGGCGGCTA CCCAACAAGG TGACAAAGAA CTAGCAATTG AAACCTGGCA GCGATTAAAA
GCATTTGTGC CTAAAGAGGC GCCGATATAT CAATCAATCG AAGCGCAAAT AGCCCAGTTA
CAAGGGAATG CCGCAGTCAC ACCGGAATCG CTGATTAAAC AAGAGCCTTT AGCGGGTGTG
GTGCCATCAG CAGATAAAAA CTCTTCAGCA GCAGAGCCTG ATAGCGTGCC TGTAATGGTG
AGTGTTAACG TTACCCTAGA TAAGCCACTG ACTGGTAAAA TACCGCAAGA CGGCTTTTTG
TTTGTTTATG CCCAAGATGC AAATGGTGGC AGCAAAATGC CAGCAGCAGT GGTGAAAATG
CCTATGGGCG AATTACCCAT TACGGTGGAA TTGTCAGATG CGAACGCTGT AATGCCTACG
CTAACCTTGT CGCAATTATC AAAGGTGCGG TTAGTGGCTA AAATATCTCA GTCTGGCAAT
GTCATGAAAA CAAGCGGTGA TTTACAAGGA ACGTTAGAGA TAACACTTAA TAAATCGAAA
AACGAACAAT ACACGATATT AATCAATGAG GAATTACCGT GA
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| Protein sequence | MSVFWITGIV LLLVAAGFVV FPWLVEGRKR QDTLTNTRLI RQRLIELERE EHEGLLSHED
RLETEKDLKI ALLDEQDSQA QNATSARGVL LIGGLLSVVT VAVLYFQVNN VSALNNWQDA
KAQLPELAER IVTQGDASVT EEDLQQFALG LRTKLTSSEN DAIGWTLLGR VYVATNRVES
AMDAFERALA IEPDNVETLA SYSQMLLMVN QESYLAQAKV YLNRILQLDP QNTGALGMLA
MAATQQGDKE LAIETWQRLK AFVPKEAPIY QSIEAQIAQL QGNAAVTPES LIKQEPLAGV
VPSADKNSSA AEPDSVPVMV SVNVTLDKPL TGKIPQDGFL FVYAQDANGG SKMPAAVVKM
PMGELPITVE LSDANAVMPT LTLSQLSKVR LVAKISQSGN VMKTSGDLQG TLEITLNKSK
NEQYTILINE ELP
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