Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2968 |
Symbol | rnfD |
ID | 4174738 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3595475 |
End bp | 3596548 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638055993 |
Product | electron transport complex protein RnfD |
Protein accession | YP_662530 |
Protein GI | 109899275 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTATA AACTAGCCAG TTCACCTCAT CAGCATGTGC GACGCAACAC CGGTCAGGTT ATGCGCATGG TGATTTATGC ATTAATACCA GGCATTTTAC TGCAAACTTG GTTTTTCGGT TTCGGGGTGT TGGTGCAAAT AGCACTCGCG GTAATAACGG CGGTTGTCAC TGAAGCGACA ATATTAGAAA TGCGTAAGCG CAACTTCGAG CGCGCGATTA AAGATTACAG CGCGATATTA ACCGCTATTC TGTTGGCTAT CAGCATTCCA CCTTTTGCTC CTTGGTGGGT GATTGTCATC GGCACGTTCT TCGCAATTGC CATGGTTAAG CAATTATACG GCGGGCTGGG TTTCAATGTC TTTAATCCGG CAATGGCGGC GTACGTCATG TTGTTGGTGT CATTTCCGGT ACAAATGACC CAGTGGCTAC CTGCGCAAAG TCTCACCGCG CATCAACCCG GCCTTATCGA CGCTATCTAT GCAGTCTTTA CTGGCTTTAG TGCCGATGGT TTTAGCCTAG CTCAGCTGCA AGGCGCTGCA GATGGTCATA CCATGGCAAC GCCTCTTGAT GCCATTAAAA CAGGACTTGC CCAGGGCTTA ACCTATGAAG AAGGACTCCA GTCGGCCATA TTTGACGGCA GTTTAGGCAT TGGGTGGTGG TGGGTTAGCA CTGGATACCT GCTTGGTGGC TTATATCTGA TACGCGCTAA GATCATCAAT TGGCATATTC CAGGGGGCAT GCTTGCAGGC GCGGCTCTAT GTGCCGGTGT AATGTTTCTA GTGGATGCAG ACCGATTTGC GTCTCCGTTA TTCCATATTT TTAACGGTAG TTTGATCCTC GGTGCATTTT TTATCGCGAC AGATCCTGTA TCCGCGTCAA CCACCAATAA AGGGCGTATT ATTTTTGGCG CTGCCATTGG GTTTTGGGTG TATGTGATCC GCACATGGGG CGGTTATCCT GACGCAATTG CCTTTTCTGT TTTAATCATG AATATGGCAG TACCGCTCAT TGATTACTAC ACCCGCCCAC GCACTTATGG CCATACAAAA CGCACTAAGG GAGAGCCAAA ATGA
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Protein sequence | MNYKLASSPH QHVRRNTGQV MRMVIYALIP GILLQTWFFG FGVLVQIALA VITAVVTEAT ILEMRKRNFE RAIKDYSAIL TAILLAISIP PFAPWWVIVI GTFFAIAMVK QLYGGLGFNV FNPAMAAYVM LLVSFPVQMT QWLPAQSLTA HQPGLIDAIY AVFTGFSADG FSLAQLQGAA DGHTMATPLD AIKTGLAQGL TYEEGLQSAI FDGSLGIGWW WVSTGYLLGG LYLIRAKIIN WHIPGGMLAG AALCAGVMFL VDADRFASPL FHIFNGSLIL GAFFIATDPV SASTTNKGRI IFGAAIGFWV YVIRTWGGYP DAIAFSVLIM NMAVPLIDYY TRPRTYGHTK RTKGEPK
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