Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2872 |
Symbol | |
ID | 4174631 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3485020 |
End bp | 3485739 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638055886 |
Product | TetR family transcriptional regulator |
Protein accession | YP_662434 |
Protein GI | 109899179 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGTAA AAAAGCAAGG GCGTAGAAGC GCCGAAGATG CAGAGCAAAC CAAATCAGAC ATATTAGAAG CCGCGGCTGA ATTGTTCTGT GAGCTCGGAT TTGAGCGTGT TTCTTTGCGA AACATCAGTG ATAAAGCCGG GGTGTCTCAT AGTCTGATAC GTCATCATTT CGGCAGCAAA GAAGAGATCT GGCACGCAAT CAGTGACGAA CTGCATGAAT TTATTGTTCG GTATGTGGCT GTGGTCTACC AAAATATGTC TAAAACAGTC CCGGCTAACG TGCAGCTGTT CGAATTTGCT AAGCGTATGC TGGCATATAT GTTGGTATTT AAACGTCCTG TTCAGTTAAT GGCGGATGCC GTGCGCCAAG AAGATGCCCT GCTCGACTAC TTCATTGGCA GTAGCGACGA TATTGAAAGT TTTGTGGAAG GGCTGGTAAG CGCTCACAAT ACCGCTTTCC CTGAAGCACA TATTCGCATG TGGGATTTAA AGTGGCAGAT TGTAATGTAT TCCCATGCCG CAGCATCCCT AACGCCGTTT CTAAAGGAAA CTTGGTCTGA CGAAACTGAC GATCTCGACA CCTGCTTACT GCGACACTTT ATGTTGTTCG AACAGACCAT GGCTGCAAGG TTAAAGATCG ATAATGGCTA TCGCAGCATC CCGAACAGTG TAAAAGAGTT GGTTTATGAA TTACCTTGCT CGGTAACGCC AGCGGAATAG
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Protein sequence | MNVKKQGRRS AEDAEQTKSD ILEAAAELFC ELGFERVSLR NISDKAGVSH SLIRHHFGSK EEIWHAISDE LHEFIVRYVA VVYQNMSKTV PANVQLFEFA KRMLAYMLVF KRPVQLMADA VRQEDALLDY FIGSSDDIES FVEGLVSAHN TAFPEAHIRM WDLKWQIVMY SHAAASLTPF LKETWSDETD DLDTCLLRHF MLFEQTMAAR LKIDNGYRSI PNSVKELVYE LPCSVTPAE
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