| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2871 |
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| Symbol | |
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| ID | 4174630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3483775 |
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| End bp | 3484848 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055885 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_662433 |
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| Protein GI | 109899178 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAAGTA GAAATGTCAG TCGCGTATTA GGCTCGCTAG GAGTTATCTT GCTGGTCAGT
GTCGGCGTAA CTGGGTGCAA CAATGTTAAC TCTCAAGAAG TGAGCCGTGT TATTAAGCCA
GTAAAGTTGA CCATGGTGCC AGACCTTAGC CGTCAGCATG TTGACAGCTT TATCGGTAAA
CTGGATGCCA CAGAGCGTGC GGTGTTGTCA TTCAACGTAG CCGGTGAAAT TGCATCGGTC
ATGCCACGCA TGGGCAAGCA GGTCAAAAAA GGCGAGTTAC TGGCAGCGTT AGACCCAACG
GATTACCAAC TCGCTTTGGA CACTCGCCAG GCAGAGTTTG ATTTGGCTGA AACACAGTAT
TTAAGAGCCA AAGCATTGAT CAAAGACACC CTTATTAGTA AAGACGTATT CGATCAAACA
GAAACCAATT ACAAGGTGGC TAAGGCTCAG CTCGCCCAAG CTAAGACAGA CTTAACCTAC
ACTAAAATTA TTGCGCCATT TGATGGCACA GTATCATTAA CTAACGCCGA ATCTCATCAG
GTGGTGGCGG CTAATCAACC AGTGATGAAA GTACTAAACA ACACCGTAAT GGATGTGGTC
TTTACCGTTC CCGTCAGTTT TGTTTCAAAC TATGGCGTGC AGGCGATTAG CCAATCGAGC
GTATGGGTGA CGATGGACTC AGCCCGTGAA CAGCAAATAC CCGCTCAATT TAAAGAAATT
TCCACCCAGC CAAATACTGA TACCAATTCT TACACTGCGC GCGTGACGGT GCGCCGCCCT
GCTGATGTGA CCTTGTTGTC AGGCATGAGT GGCCAAGTAC ATGTGGCTAA CCCAGAAAAT
AAACGTCAAT TCACTTTGCC CAGAACTGCG TGGATCAGCA AAGAAGATGG CAAAGGTCAC
GTTTGGAAAT TCGAGCCAAA TGAAAAACGT GTGATGAAAA CAGCCGTGCT ATTAGATGAC
AATGGTTTTA TTCATAGCGG GTTGCAACAA GGTGATCTCG TGGTTGAAAC CGGCATTCAC
GGTCTTGAAG AGGGTCAGCT TGTTAAGCCG TGGGTAGAAG AGGACGGAAT TTGA
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| Protein sequence | MLSRNVSRVL GSLGVILLVS VGVTGCNNVN SQEVSRVIKP VKLTMVPDLS RQHVDSFIGK
LDATERAVLS FNVAGEIASV MPRMGKQVKK GELLAALDPT DYQLALDTRQ AEFDLAETQY
LRAKALIKDT LISKDVFDQT ETNYKVAKAQ LAQAKTDLTY TKIIAPFDGT VSLTNAESHQ
VVAANQPVMK VLNNTVMDVV FTVPVSFVSN YGVQAISQSS VWVTMDSARE QQIPAQFKEI
STQPNTDTNS YTARVTVRRP ADVTLLSGMS GQVHVANPEN KRQFTLPRTA WISKEDGKGH
VWKFEPNEKR VMKTAVLLDD NGFIHSGLQQ GDLVVETGIH GLEEGQLVKP WVEEDGI
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