Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2803 |
Symbol | |
ID | 4174563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3402199 |
End bp | 3403401 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638055820 |
Product | ribonuclease D |
Protein accession | YP_662368 |
Protein GI | 109899113 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGCTGGCTT TTTTATTTGT TTGGAAACAC GTGCAATATA TTTCAATTAC CACAGATGAA ACGTTGAACG CATACTGCGC TCAACTGGCA AAAGCCCAAG CGATTGCCGT AGATACAGAG TTTGTGCGAA CACGCACTTT GTATCCACAA CTCGGTTTAA TTCAGATTTA CGATGGGCAG CAAATCGCGC TTATCGATCC ACTGGAAATC AGCGATTTCA CTGCGCTTAA AGCGATTTTG ACCGACGAAA ATATCGTTAA AGTGTTGCAC TCGTGTTCAG AAGACATCGA AACCTTTATT TGTGCTCTTG ATATCGTTCC TCGTCCTATC TTTGACAGTC AATTCGCTGC TGCTATTACC GGCATGGGAC CGTCTTTAGG GTATGCTAAG TTGGTAGAGG TGATGCTAGA TATTCAGGTC GATAAAGGAG AGTCGCGCAC AGATTGGCTT GCCAGACCTT TATCGCCTAA GCAGTGTCAA TACGCGGCTT ATGATGTGTT GTATTTGTTT CAGCTTTATC CCACGTTGTG TGATAAAACG CTTGCTCAAG GTCGCCAAGC TTGGGTGTTT GCCGAAATGG AAAACTTAAC GCGCAAAAAG CTGAGTCAAG TTCCCTACGA ATTACTCTAC TTAAATATAA AGAATAACTG GCATGTAACC GGCAAATCCC TGTATGTGTT ACAGCAATTA ACCGCTTGGA GGGCCAAAGA AGCGCAGCAG CGTGACTTAG CCTTGAACTT TGTAGTTCGT GAAGCAAATT TGGTGGAGGT AGCGAAACGT CTTCCGGCAA GTAAAAACGC GCTGCATCAA ATCAGTGGAT TAACCCCTCA AGAAATTCGT ATTAACGGTC AAGCAATGCT TGATATCGTA GCCGCCGCAG AGCATGTGGA TGAATCAGCT TACCCCCAGC CAGTCGAACG CTTAGTCGAT TTTTCACGCT TTAAGAAGGT CGCTGCAGCA GTGCGCCAAG TCTGCGTGCA AACAGCAGAA AAACTGGGGG TGCCGGTTGA ACTTATAGGC TCAAAAAAGC AAATCAATCA GTTGATAAAG TGGTGTTGGT TCCTTGACGA CGATACGCGT GCGCAAGGTT TGTTGCCAGA CTTATTAGAG GGCTGGCGCG GTGAGCATTT GCAGGCTGCA CTGGCGAAGG TCGATGGTTT AAATATAGCC CAATCAATCA GTGAGGACTC AACCCATGCT TAA
|
Protein sequence | MLAFLFVWKH VQYISITTDE TLNAYCAQLA KAQAIAVDTE FVRTRTLYPQ LGLIQIYDGQ QIALIDPLEI SDFTALKAIL TDENIVKVLH SCSEDIETFI CALDIVPRPI FDSQFAAAIT GMGPSLGYAK LVEVMLDIQV DKGESRTDWL ARPLSPKQCQ YAAYDVLYLF QLYPTLCDKT LAQGRQAWVF AEMENLTRKK LSQVPYELLY LNIKNNWHVT GKSLYVLQQL TAWRAKEAQQ RDLALNFVVR EANLVEVAKR LPASKNALHQ ISGLTPQEIR INGQAMLDIV AAAEHVDESA YPQPVERLVD FSRFKKVAAA VRQVCVQTAE KLGVPVELIG SKKQINQLIK WCWFLDDDTR AQGLLPDLLE GWRGEHLQAA LAKVDGLNIA QSISEDSTHA
|
| |