Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2788 |
Symbol | |
ID | 4174548 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3384872 |
End bp | 3385750 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638055805 |
Product | LysR family transcriptional regulator |
Protein accession | YP_662353 |
Protein GI | 109899098 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCGTTTAC GTCATATAGA AATATTTCAT GCTATTTATA CCACGGGCTC AATTACCAAC GCGGCTAAAA TTTTGCACGT ATCGCAACCT GCCGTGAGTA AAGTGCTGCT TCATGCAGAG CAGCAATTAG GGTTTGCGTT ATTTACTCGT AACAAAGGCC GCTTGATCCC AACCCCTGAA GCAAACATGT TGTTTCATGA AGTGGACAAA ATACATCAGC AAATGCGTAC TATCGATAAC ACTGCGCACA ACATAAAACA TGCTCACTCG GGCAACATTA ATATTGGTAT TACCCCGGCG TTGGGGTTTG ACATATTGCC AAGAGCCATC GCTCGCTATC ATCAGCAGCA CCCAAACGTG AGCTTCAGCA TTAATACCGT ACACAACGAC GCGGTCTTAC AAAGCCTTAT TGAGCATAAA TCTGATGTGG CCGTTTTGTT TCATCCGAGC CCTAAATTAG GCGTAGATAG CATTGAATGT GGGCAGTCTG AGTTGGTAGT TGTTTACCCT AAAGCGTTAT TCCCTGATGC ACCTTCGCTG CTTAGCATCG AAGCCTTGGC AAATGTTAGC TTTATTGGTA TTAGTGATTC AGGCCCATTG GGGGATATGC TCTACAGTCG TTTGCAAAGC GAAAACATGC AGCCTCATAG TCCTATACAG GTACAAACCT ATTTTATTGC AGCAAGATTA GTGGCACAGG GCTTAGGGGT ATGCGTAGTA GACAAACACA CGGCGCTAGG AAATTTAAAT GATAACATCG CCATGGCATC GTTCACCCCG CCCCTTAGCT TTTCTATTAA TGCCCTGCAT TTACAAAACA GGCCACTGTC TAAAGTAGTC CAGGGGTTTC TGCCGTATCT ACAAGCAGAA ATAACCTAA
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Protein sequence | MRLRHIEIFH AIYTTGSITN AAKILHVSQP AVSKVLLHAE QQLGFALFTR NKGRLIPTPE ANMLFHEVDK IHQQMRTIDN TAHNIKHAHS GNINIGITPA LGFDILPRAI ARYHQQHPNV SFSINTVHND AVLQSLIEHK SDVAVLFHPS PKLGVDSIEC GQSELVVVYP KALFPDAPSL LSIEALANVS FIGISDSGPL GDMLYSRLQS ENMQPHSPIQ VQTYFIAARL VAQGLGVCVV DKHTALGNLN DNIAMASFTP PLSFSINALH LQNRPLSKVV QGFLPYLQAE IT
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