| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2585 |
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| Symbol | |
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| ID | 4174345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3135083 |
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| End bp | 3137455 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055606 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_662154 |
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| Protein GI | 109898899 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0776775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACTA ATGTGCCAAA GAAGCAAAGC CTTATTGCTT TGTCTGTGCT GTCAGCTATG
TCTATGACGT CATTGCCAGC TTTTGCTCAA GAAGCAGACA CACAAGCCAG TGCAAAAAAA
CAACAAGAAG AAGACTTTGA GTCTATCGTA GTAACGGGAC GTAACGTGTC GTACGCAAAC
AGTGCCGCTT CTGAAGAAAT GAAAAAGCAG CAAACACCCA TGACTAGCGT GCTGGCCTTA
GTCGATAACT TGCCAGGCGT ATTAGTGACT GAAGGTGACC CGTTTGGCTC TGATGAATGG
TCTACTAGTA TTTCAATTCG TGGTTTTCAA TTGAACCTTG AATCACAGCA AATTGGTATG
ACGGTTGATG GCATATCAAA TGGTAACTCG AACTACGGCG GTGGTACCAA AGCCAGTCGT
TATATTGATA CCGAAAACTT GCGTGGTGTA GAAGTATCTC AAGGTACTGC TGATATCAGC
TCGCGCTCAA ACGAAGCGCT TGGCGGCACA ATGGATTTCA CCACCATTCT ACCTGCGTTA
GATGAGCAAT TAACGGTTAG CACAACACTT GCAGAACATA ACGCGAGAAA ATTTTACGTT
CGTTACGATA CCGGCGAAAT AGCACAAGAC ACGTTCGCGT GGATGTCACT ATCAAGCCAG
CAAAATGATG ACTACATGGA CGGTTCAATC ACCAACAAAC GTGATCACGC TGAAGGTAAA
ATTATCAGCA CCATTGGTGA AGTGGATCTT ACCGCTTATG TTAGTTACGA CGATGCAGAA
GAATACACTT ATCAACGAGT TTACGGTTTA GCTCAATACG AGCAAAACGC TGAATGGGAC
GGCTTGACTG AAGATTGGTC TGGCGTGCCA TACCAAGACC AAGTGTTTCG TGAAGGTTGG
GTAACTGAGC GTGAGAACTT TTTCACTTAC TTAAAAGCTG ACTTCGCGGT AGGGGAAGTT
GATTTTAGTA CTAACGTCTA TTACCACGAG AATGAAGGCG CAGGAAAATG GATCCCATAT
TACATTGCTG ATGTCACTGA TGACGGCGTA GGTAATCCAA ATTCTGAGCT AGATTCATCG
ACCACTGCCT ATGGCGGCGC ATCTCAAGGT TTGATTTATT TTACTAATCG CGCTGGCGAA
ACGCTATCGC CAATCGCTGG TTGTGAAAGC TCAATTGGCT TCCCTTACGG CGGTGGCGGT
GCAGAAATCG ACCCAGGTTG TTACGAGCAA GGCGCTATTC CAGTTAGCTC AAACCGTCAT
ACCCATTATG ATAAAAAACG TTACGGCGTA AACGGTGACT TTACCTGGAA TACCAGTATT
TCTGATATGG ACAACGTATT ACGCGGTGGA TTTTGGTATG AAGATTACCA ACGTGATGAG
TATCGTGATT GGCACAAAAC CATAGATGCT GCCACGAGCC CTCGCTATGA CGAAACCCCT
TATTGGGTGC AGTACGATCG TGAATTCCCA GTTGAAACCT TGATGTATTA CATTGAAGAC
GAACTTGATG CTGGCTTCGC TAAATTCCGT TTAGGAGCAA AGCAATTCAA GGTTGATGTA
TCTAAAGAAG ACCAGTTTGT ACCAGAGAAC GACTTGGATG TCTCATCTGA TTCAGACGTG
CTTATTTCAG CTGGTTTTGT TGCGCCATTG CCGCTAGACG GCCTAGAAGT ATTCGGTGGT
TATGCTGAGA ACTTTGCCGC AGTAAAAGAT GCAGTACTAG AGCGTGATGA CGCTGATGTG
AGCACAGTTG AGCCAGAAAC AGCTGATAAC ATAGATTTTG GTTTACGTTA TTCAACGCCT
GGTTTTAACG CAAGCTTGAC CTATTACAAC ATCAAGTTTG AAAACCGTAT TACCTTCATC
AGCAACGAAG ACGTTAATGG TATCGACTTC TTAGAATCTG CTGCGGGTGG CTTCCTAAAT
GACGGTGGTA TTGAATCAGA CGGTATCGAA GCATCAATCG ATTATAAGAT TAACGAGAAC
TTCGGTGTGT ATGTTTCATA TACTAAGAAT GAATCGACTT ACACTGATGA TGATCAAGAT
ATTGGCGGCA AAACAGTTAT CGGCAGCCCA GAAGATATGG CGGTTATCAG CTTTGATTAC
GCCAAGAATG ACTTCTACGC TGGTTTTAGC ACCAAATATG TAGGTGAGCG TTTCTTAGAC
CAAGCCAACA CGCAAGAAGT CGACTCTTAC GTAGTGAGCG ATTTGTATGT AGGTAAAACA
GCTTACGATA TCGGTGGCAG CATCGAGAGC GTAGAGCTTA GCTTTACCGT AAACAACGTA
TTTGACGAAG AGTACTTAGG TTCAATCGCG CCAAATGCGG GTTGGATTGG TGCACCGCGC
ATCGCATCAT TCAACGTTAG ATTCGTAATG TAA
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| Protein sequence | MNTNVPKKQS LIALSVLSAM SMTSLPAFAQ EADTQASAKK QQEEDFESIV VTGRNVSYAN
SAASEEMKKQ QTPMTSVLAL VDNLPGVLVT EGDPFGSDEW STSISIRGFQ LNLESQQIGM
TVDGISNGNS NYGGGTKASR YIDTENLRGV EVSQGTADIS SRSNEALGGT MDFTTILPAL
DEQLTVSTTL AEHNARKFYV RYDTGEIAQD TFAWMSLSSQ QNDDYMDGSI TNKRDHAEGK
IISTIGEVDL TAYVSYDDAE EYTYQRVYGL AQYEQNAEWD GLTEDWSGVP YQDQVFREGW
VTERENFFTY LKADFAVGEV DFSTNVYYHE NEGAGKWIPY YIADVTDDGV GNPNSELDSS
TTAYGGASQG LIYFTNRAGE TLSPIAGCES SIGFPYGGGG AEIDPGCYEQ GAIPVSSNRH
THYDKKRYGV NGDFTWNTSI SDMDNVLRGG FWYEDYQRDE YRDWHKTIDA ATSPRYDETP
YWVQYDREFP VETLMYYIED ELDAGFAKFR LGAKQFKVDV SKEDQFVPEN DLDVSSDSDV
LISAGFVAPL PLDGLEVFGG YAENFAAVKD AVLERDDADV STVEPETADN IDFGLRYSTP
GFNASLTYYN IKFENRITFI SNEDVNGIDF LESAAGGFLN DGGIESDGIE ASIDYKINEN
FGVYVSYTKN ESTYTDDDQD IGGKTVIGSP EDMAVISFDY AKNDFYAGFS TKYVGERFLD
QANTQEVDSY VVSDLYVGKT AYDIGGSIES VELSFTVNNV FDEEYLGSIA PNAGWIGAPR
IASFNVRFVM
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