| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2560 |
|---|
| Symbol | |
|---|
| ID | 4174315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3104709 |
|---|
| End bp | 3105086 |
|---|
| Gene Length | 378 bp |
|---|
| Protein Length | 125 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638055577 |
|---|
| Product | invasion gene expression up-regulator, SirB |
|---|
| Protein accession | YP_662130 |
|---|
| Protein GI | 109898875 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3094] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0147676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACACAG CAGTCAAACA CATTCACTTA ACCTGCATAG CGCTGAGTGT TTTGTTATTT
GTTATACGCT TTTTTTGGAC CATGACCAGC TCAAGTATGT TGCAAAAAAA ATGGGTGAAA
ATTACCCCAC ATATTGTTGA TACCTTACTG ATCCTAAGTG CTGCGACTTT GTGTGTCATG
ATCAGCCAAT ACCCATTTGT CACCCCATGG GTCACTGAAA AGTTTGTGGG TTTGTTGATG
TACGTATTTA TGGTGGCGTT AGCATTAAAG ATGGCACGTA CCAATTTTAT GCGTGTCGTT
GGTTTAGTGG GGGCATTAAG CTGGATAGCC TTCACTGCAT TGGTCGCGAT CAGTAAGCAA
CCAATTTTGT TCGCCTAA
|
|---|
| Protein sequence | MYTAVKHIHL TCIALSVLLF VIRFFWTMTS SSMLQKKWVK ITPHIVDTLL ILSAATLCVM
ISQYPFVTPW VTEKFVGLLM YVFMVALALK MARTNFMRVV GLVGALSWIA FTALVAISKQ
PILFA
|
|---|
| |