| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2522 |
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| Symbol | |
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| ID | 4174277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3057722 |
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| End bp | 3058309 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055539 |
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| Product | rhomboid family membrane protein |
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| Protein accession | YP_662092 |
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| Protein GI | 109898837 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTACGAC TACCCTACGC TTTGCCCCAC TCCCTTGGGC CAATCATAAT TTGTGTCATC
GCGACCATGC TTTTTATCGC TGAGCCTTCC AGTAGCACCT GGCTAGCATT CGACCGTGAG
TCCATAAACC AAGGTCAATG GTGGCGGGCA CTAACGGGTA ACTTTTTACA CACCAATTTT
AATCACCTCT TGCTCAATCT GGCGGCCGTA GTTTTGCTCT GGTCACTCCA CGGTCAGTAT
TATCACACCG CTCATTACTT GCTAATGTTG GGGTTGTTTT CGTTCGGCGT CAGTGCGGGG
ATTTATTATT TTGAACCAGA AATGCAATGG TATGTCGGGC TATCAGGCAT TTTACACGGT
GTTTTTGTAT GGGGCGCCTA TCAGGATATC AAGTACGGCG TCACTAGCGG CTGGATCTTA
ATGGTCGGTG TATGGGCAAA AATAGCAAAC GAACAAATCG CAGGCCCAAG TGGGAGCATC
GCCGAGCTTA TTGATGCAAA CGTAGCCATT GATGCACATT TATTTGGGGC TTTTTGTGGG
CTCCTAGTCA TTATTTGTTC ACTTATCAAA CAGCAAAAAA ACGGCTAA
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| Protein sequence | MLRLPYALPH SLGPIIICVI ATMLFIAEPS SSTWLAFDRE SINQGQWWRA LTGNFLHTNF
NHLLLNLAAV VLLWSLHGQY YHTAHYLLML GLFSFGVSAG IYYFEPEMQW YVGLSGILHG
VFVWGAYQDI KYGVTSGWIL MVGVWAKIAN EQIAGPSGSI AELIDANVAI DAHLFGAFCG
LLVIICSLIK QQKNG
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