| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2393 |
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| Symbol | |
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| ID | 4174141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2911432 |
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| End bp | 2913009 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055404 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_661963 |
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| Protein GI | 109898708 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCT TTTTCAGTGT CACCATTTCG TTTGTTGTCG GTGCAGTTAT TGCCCTTGTT
ATTTACACAC AGTTTAACGA GCAAGCATCG AATACGGGTA TGAGTCACTC AAGTGATTCC
GCCCAAACGC AACCTAAAAA AACGCCTTTG TATTGGGTGG CGCCAATGGA TGCAAATTTC
CGCCGTGATG AACCGGGTAA ATCCCCCATG GGCATGGATC TTATTCCGTT TTATGGTGCT
GGCGATGATG GCAGTGGCTC TTCGCAAAGT GAGCAGGCAG GACGGGTAAA AGTGTCACCC
AATGTGGTGA ACAATTTAGG TGTACGTACA GACTTTGCGC GCAGTGCCCC CCTTGAAAAC
ACTATTCAAA CAGTGGGATA CGTGGGCTAT AACGAAGACA AAATTGTGCA TATGCACCCA
AGAGTTGAGG GTTGGGTTGA TGCCTTGTAT GTCAGTACCG CAGGTGAAGC TGTTACCAAA
GGGCAAAAAG TATACGGCAT CTATTCACCC CAGTTGGTCA GTGCTCAGGA GGAGTATTTA
CTAGCGAAAA AAGGTAAGAA CCACGCTTTG ATAAAAGCAG CGCGTTTACG GTTACAGTCA
TTACACATGC CACAAGAAGC ACTAGTCCAA CTTGATAGTA GCAATGAAGT AATGCAAAGC
GTGACGTTTT ACGCGCCTCA ATCTGGGGTG CTGGAACACC TTAAAATACG CCACGGGTTT
TATGTAGAGC CGGGCACAAC CTTGATGTCG ATTGCCAGTT TGGATGAGGT TTGGGTAGAG
GCTGAAGTCT TCGAGCAACA AGTTGACTTG CTCGAAGAAG GGCTTGGGGT GACGATGAGC
GTGGGGTACT TACCAGGGCG ACGGTGGCAA GGAAAATTGG ATTATATTTA TCCGTCGTTA
AATGAAACAA CCCGGGCTTT ACGTGTGCGT CTTCGTTTCG AAAATCCCGA ACGCCTGCTA
AAGCCAAATA TGTTCGCAAA TATTACGATC AAGGCAAACT CAAGCCTGCC CGTGGTACTT
GTGCCGCGTA GCGCCGTTAT TCGAACGGGT GTTCAGGATC GCGTGGTACT CGCTTTAGGA
GATGGTTATT TTAAATCTAT AGAGGTCAAG CTTGGGCGCA TGAACAGGGA CTTCATCGAA
ATACTAAGTG GCATTCAAGC GGGAGACGAG GTGGTAGTTT CGGCGCAGTT TTTATTGGAT
TCACAGAGCA GTATTTCGTC AGATTTTAAG CGTTATGAGC ACCATGGTGC GCCAAACATG
CAAGGCATGG CTGATACGCA AGACATGCCT GATATGGATA CCCACTTTGA TGCGAACAAG
CCAAATATTC AGCGAGCAAG TGTTCGCGGT GTCGTTAATA GCGTTGATGT GTCTACTAGG
CAGGTAAATA TCAGTCGCGC CGGGATTGAA AAATGGAATC GCGGGCCTGC GACGATGAAC
TTTGTGCTGG GTCGTGAGCT TGAACACGCC CAAGTTAATA GGCTGCAAGA AACCAAGGCG
ATTCAATTTA CCTTCGAAAT ACGTGACGGT GACTTTGTGA TCACTAAGCT CTCATTCGTC
GATGAGGAAA CACCATGA
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| Protein sequence | MKPFFSVTIS FVVGAVIALV IYTQFNEQAS NTGMSHSSDS AQTQPKKTPL YWVAPMDANF
RRDEPGKSPM GMDLIPFYGA GDDGSGSSQS EQAGRVKVSP NVVNNLGVRT DFARSAPLEN
TIQTVGYVGY NEDKIVHMHP RVEGWVDALY VSTAGEAVTK GQKVYGIYSP QLVSAQEEYL
LAKKGKNHAL IKAARLRLQS LHMPQEALVQ LDSSNEVMQS VTFYAPQSGV LEHLKIRHGF
YVEPGTTLMS IASLDEVWVE AEVFEQQVDL LEEGLGVTMS VGYLPGRRWQ GKLDYIYPSL
NETTRALRVR LRFENPERLL KPNMFANITI KANSSLPVVL VPRSAVIRTG VQDRVVLALG
DGYFKSIEVK LGRMNRDFIE ILSGIQAGDE VVVSAQFLLD SQSSISSDFK RYEHHGAPNM
QGMADTQDMP DMDTHFDANK PNIQRASVRG VVNSVDVSTR QVNISRAGIE KWNRGPATMN
FVLGRELEHA QVNRLQETKA IQFTFEIRDG DFVITKLSFV DEETP
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