| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2238 |
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| Symbol | |
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| ID | 4172390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2713761 |
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| End bp | 2715026 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055246 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_661810 |
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| Protein GI | 109898555 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.811605 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTCGAAA AACCTTCTTC TAAGAAAAGC CTATGGGTTG TCGTCGCTGT TCTGTTTCTG
TGCGCAGCGC TTATTTATGT ATTTTGGAGT ACGGTACGTA ACTGGTCGTC TGCGGATACC
AGTCTGTCGA TGCGAAATGT GCGGGTAGCC ACAGTGACCG TAAAAGACTT TGTACGAGAT
TTATCCGTTC AAGGTCGTGT TGTTGCCGCC GTTAGCCCTC GTCTTTATAG CCCAGCGCAA
GGCACGATCA CCTTTGAAGT TGATGCCGGT GACAAAGTAA TGAAAGGCCA ATTATTGGCA
ACTATTGAAA GTCCAGAATT AACTAATCAG CTCAAGCAGG AAGAATCTAG CTTACAACGT
AATAAGCTGG AATTAGACAG ACAACGGATC CAAGGCAAAA AACTCGCCCT AGAGAAACAA
AAAGCCGCGG ATTTGGCCAA GGTTGCCACC GTAGCAGCAG AGCGTGAAAA GCGCCGCGCC
GATAATGCCT ATGCCACCCA TGCCATAAGT CAAATTGATT TTGAAAAAGC CCAAGACGAT
TTAAAAAATG CGCAGTTGGT GCTCAAGCAT GCATTGCAAG ACGCCAGCTT AGATCAAGAA
AGCCTCGACT TTGAGTTAAA AACCCAGCAG TTATTGGTAC AACGCCAAGC GTTACAGGTA
TCAGAAACTA AGCGCCAAGT TGATCAGCTT CAAGTGCGCT CTCCTGTGGA TGGCATCGTT
GGCAACCTTG CGGTGCAACA GAAAAATCAG GTTAGTAAGA ATCAACCGAT TTTAAGTGTG
GTGGATTTAT CCGAATTTGA ATTAGACGTT GATATCCCCG AGAGTTACGC AGACGACTTA
GCAATCGGTA TGGATGCACA AGTCAGTTTA AACTCTCAAC AATACGCCGC TGTTTTAGTG
ACTATTTCCC CCGAAATTGA GAATAACCAA GTTGCCGGGC GTGTGCGTTT CGCCAAAGAA
AACCATCAAG GCGAAGCCCT AAAGCAACCA GAAGGCCTAA GGCAGAATCA GCGACTGAGC
ACAAGAATAC TCATGGAAAA CAAGTCATCT GTGTTAACCC TACCCCGTGG TCAATTTTTA
CAAAGTGACA ATGGTCGCTT TGCCTATGTC ATTAAAGACA ATATGGCATT ACGCCAGCCG
ATTACGATAG GTGCGCGCAG CTTAAGTGAA GTGGAAATAC TGGCCGGTTT GACCGAGGGT
GACCAGGTTA TTATCTCTTC AACCGACGCC CTCGATGGAG CTGAATCAGT GCTGTTAGCA
CGCTAG
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| Protein sequence | MLEKPSSKKS LWVVVAVLFL CAALIYVFWS TVRNWSSADT SLSMRNVRVA TVTVKDFVRD
LSVQGRVVAA VSPRLYSPAQ GTITFEVDAG DKVMKGQLLA TIESPELTNQ LKQEESSLQR
NKLELDRQRI QGKKLALEKQ KAADLAKVAT VAAEREKRRA DNAYATHAIS QIDFEKAQDD
LKNAQLVLKH ALQDASLDQE SLDFELKTQQ LLVQRQALQV SETKRQVDQL QVRSPVDGIV
GNLAVQQKNQ VSKNQPILSV VDLSEFELDV DIPESYADDL AIGMDAQVSL NSQQYAAVLV
TISPEIENNQ VAGRVRFAKE NHQGEALKQP EGLRQNQRLS TRILMENKSS VLTLPRGQFL
QSDNGRFAYV IKDNMALRQP ITIGARSLSE VEILAGLTEG DQVIISSTDA LDGAESVLLA
R
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