Gene Patl_1949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1949 
Symbol 
ID4172084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp2365562 
End bp2366236 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content47% 
IMG OID638054957 
Productputative transposase 
Protein accessionYP_661521 
Protein GI109898266 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.307515 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTTTA TCAAGAAAGA GGATTTCGCC AAAAACCAAC TAGATAACAA CACCATGCGT 
GATATTCATA TCTTACACGA TTTGCTTAAA AAACAATGCC CTAATCTACA TGCCAAACGT 
CTTTCCTCTT TGATGGTTGC CACCCAATCT TTGCTAGATG GCCAGCACCT ATCGTTGACC 
GAATTAGGAC GCAATATCTC AGGCTCCGTG GCCCCGAAAC ACAACATTAA ACGCATCGAC 
AGGCTGCTTG GTAATAACAA CCTACATAAT GAACGGCTCG ACATCTATCG TTGGCACGCT 
CGCTTGCTTT GCGGTGCTAA CCCCATGCCG GTTGTTCTTG TGGATTGGTC TGATGTGCGT 
GAGCAGCTCA GGCATTTAAC CTTACGTGCA TCGGTCAGTG TTCAGGGGCG CTCTGTCACG 
CTTTATGAGC GCGTATTTTC ATTCGGTGAA TACAATTCAC CTGTTAGTCA TAATCCGTTT 
TTACGGGAGT TGGCGAGTAT CCTGCCGTCG GGTTGTTGCC CGTTGATTGT GACCGATGCA 
GGCTATCGTA ACCCTTGGTT TCGTGAAGTC GAAAAGCATG GATGGTTCTG GCTAGGCCGA 
GTGCGCGGTG ATGTGGGATT TAAGCGAAAA AAAAGAAAGA CACCCATGAT AAAAATGGTC 
AATTTTCAGG GCTGA
 
Protein sequence
MSFIKKEDFA KNQLDNNTMR DIHILHDLLK KQCPNLHAKR LSSLMVATQS LLDGQHLSLT 
ELGRNISGSV APKHNIKRID RLLGNNNLHN ERLDIYRWHA RLLCGANPMP VVLVDWSDVR 
EQLRHLTLRA SVSVQGRSVT LYERVFSFGE YNSPVSHNPF LRELASILPS GCCPLIVTDA 
GYRNPWFREV EKHGWFWLGR VRGDVGFKRK KRKTPMIKMV NFQG