Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1894 |
Symbol | |
ID | 4172739 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2290228 |
End bp | 2291889 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638054903 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_661468 |
Protein GI | 109898213 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0630277 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGCTTAC ATACCCTACT ATGCCTATCG CTAGTGTCTA TTTTACCGGC CTGTCAGATG ATGGAGCCTC ATTCAGACAT AGCTGAACAG ATAGACCAAG AGCACGAAAT AGCGCAAGAA ATTGCCATGA CATGCGAACA ATCCGGTGAG TTAGCTGATC AGGCATTCGA CTGTGAAGCG GCGGATGAAG GTATTATACC TGTCACCCAC CCAGAAGAAG AGGTCGAGGT CACAATTGAA CCAGAGCCAA TCCCGCAAGA CGTTGCCGCA CTCGACGTAT GGCAATACGT GGGTCAACAC CTCGCTTTGG ACTTTGAAGA CAACAAACGC ATTGCTAGTC AGCGCAACTG GTACCTAAAA CACCCCAGCT ACATGCAACG TGTTGCAAAG CGTGCTAAGC CATTTTTGTA CCTGATTGTA GAGCGCCTTG AAAGTGAAAA TATGCCTATG GAACTAGCGC TTTTACCCAT AGTAGAAAGC GCCTTTGACC CTTTCGCCTA TTCACATGGC CGCGCTGCGG GTATGTGGCA ATTCGTACCG GCAACGGGCA AACGTTTTGG CATGAAGCAA ACATGGTGGT ATGACGGGCG CCGTGATGTC ATGGCATCAA CTGATGGCGC AATTGCTTAC TTGAAGTACT TAAACGAAAT GTTTGACGGC AACTGGTTAC ACGCCCTTGC AGCTTACAAC AGCGGTGAAG GTCGTGTTAT GCGCGCCATT AAAAAGAATA AAAAAGCGGG TAAAAGCACA GAATACTGGG CCCTAGATTT ACCCAGAGAG ACCCGCGCTT ACGTCCCCAA ATTATTGGCC TTGGCAGACA TACTTAGAAA CGCAGAAACC TATGCGTTCA AATGGCCTGT TATCGAAAAT ATCAAAGTGA CTGAAGAAGT CGATGTCGGC TCGCAAATTG ATTTGGCCCT TGCTGCTGAT ATGGCAGGTC TTACGGTTGA AGAGCTGCAT GCGTTAAACC CAGGTTATAA TCGCTGGGCT ACCGACCCCG AAGGGCCGTT TAAGCTGCTT GTGCCAGTGG ATAAAGCAGA CACCTTTAGT GACGCTATTG CGGCAACCGA AACCAAAGAG CGTTTAAACT GGGTTCGCCA CAAAATTAAG AGCGGCGACA GTCTGTTGAA ACTAGCGCAC AAATATCACA CTACCACAGA CATTATTAGC CAAGTAAATG AGTTAAAAGG CAATGTGATC CGCGCTGGGG AATACTTGGT TATACCTGTG GCATTAAAAT CACTGGACTT TTATTCACTC TCTCAAGAGC AGCGCTTAGC GGATACGCAG TCTAAGCACA AAAGCGGGAC GTATCAGGTC AAGCACAGAG TCAAAAATGG CGACACCATG TGGGATATAA GTCGTAAATA TAAAGTCAAC ATGCGCAGCT TAGCCAAGTG GAATGGTATG GCCCCTACGG ACATGTTGCG CCCAGGTAAA GAGCTAGTGG TATGGCTTAA GGGCAAGGAC AGCAAAAAAC ACAGCGATGC GGTAATACGC ACCCTCACCT ACACAGTGCG CGGCGGTGAT TCATTGGCCA GAATCGCGCA AAAATTTAAG GTCAATGTGT CAGACTTGGT CGCATGGAAT CAAATAAGTA CCCAAAAATA CCTACAACCC GGCCAGAAGC TTAAAATCAA GGTGGATGTC ACTCGCACCT AA
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Protein sequence | MRLHTLLCLS LVSILPACQM MEPHSDIAEQ IDQEHEIAQE IAMTCEQSGE LADQAFDCEA ADEGIIPVTH PEEEVEVTIE PEPIPQDVAA LDVWQYVGQH LALDFEDNKR IASQRNWYLK HPSYMQRVAK RAKPFLYLIV ERLESENMPM ELALLPIVES AFDPFAYSHG RAAGMWQFVP ATGKRFGMKQ TWWYDGRRDV MASTDGAIAY LKYLNEMFDG NWLHALAAYN SGEGRVMRAI KKNKKAGKST EYWALDLPRE TRAYVPKLLA LADILRNAET YAFKWPVIEN IKVTEEVDVG SQIDLALAAD MAGLTVEELH ALNPGYNRWA TDPEGPFKLL VPVDKADTFS DAIAATETKE RLNWVRHKIK SGDSLLKLAH KYHTTTDIIS QVNELKGNVI RAGEYLVIPV ALKSLDFYSL SQEQRLADTQ SKHKSGTYQV KHRVKNGDTM WDISRKYKVN MRSLAKWNGM APTDMLRPGK ELVVWLKGKD SKKHSDAVIR TLTYTVRGGD SLARIAQKFK VNVSDLVAWN QISTQKYLQP GQKLKIKVDV TRT
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