| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1836 |
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| Symbol | |
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| ID | 4173021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2215620 |
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| End bp | 2219645 |
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| Gene Length | 4026 bp |
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| Protein Length | 1341 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054845 |
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| Product | two component AraC family transcriptional regulator |
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| Protein accession | YP_661410 |
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| Protein GI | 109898155 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTGGA TCAAACGTGT TGTTTTCCTT ACCTGTGGTT GCGTGTTTCT TATGCATGGC
GTCCATGGTC AACAATATAG TGAGGTGGGT TTACCCATCA GCAAAGTGTT TGGCTTACAA
GAGCACAATG GTAGTGATCA GAACTGGTGG TTAAGTCAAA GTGAAAATGG GTTTATTTAC
GTAGGTTCAG GTACCGGCAT CACTCAATTT GATGGTGAAC GGTGGCGTAA ATATGTCACA
CCGAACAGTA CACGTGTGCG CGCGTTAGCC CATTGGAAAA ATAACCATAT TTACGCGGGC
ACAATCGATG ATTTGGGGGT TTATCAACCC GATGATTCTG GGCAATTGAT TTTTCGGTCT
TTGATAGCTG ACTGGCCTAC TGAAACCCGT CAATTTGGTG AAATCTGGTC CGTGGCGGCC
AGTGAAGAAG GCGTTGCCTA TGTCAGTAAC AAGCAAGTTT ACTTTTGGGA TGGAACACAG
ATACATACCG TCCCTGGCGC AATAGGCGGT AAGCATCGCA TATTTTCCGT CGGTAAGGGG
TTTGTATATA AAACGAAAGA CAGCAGCACA ATACACAAGC TCAGCATTAC CAGCACAGAT
AGCACAACCA CGTTTTTAGT CACCTCAACC CCTTTAGCTC TTCCTAAAGA CGCTTATGTA
CGTAAAATAT TCACCAACCG TCAAAATGAG ATGACAATCA TTACTGCACA GCACGGTATT
TTCGTTGAGC GAAACAACGC TTTGCAGCGC GTACTGGCAC CTCATGCGTT GCCCCCAAAG
ACCCATCTAT ATAATGCTAT TCAGGCCAGC GACGGTCTTT ACTACCTCGT CTCTTTGTAC
AACGGCCTCT TAATCATGAA TGAATCGTTT GAACTCGTCA GGCGCTATCA AAGCGAACAC
CACATCCACA TGAGCACGCT GTATTCAGCG CTTGAAGATC ACCAGGGTAA TATCTGGTTA
TCCGGTATTC CTGGTCTGGT CAAAATGCTG CCGCCTCAGC GAGTCAGTGA GTTTCCTATT
GGTGATAACT CCACCATCAT AGATAAGCTC AGTCACATCA ATGGGCATGT AGTTGCCGCA
GGAGACGGTC TGTTTCAGCT AAACGCGTCA CAATCTGTAA CGAGTCCCCC TGCGTTTTGG
CCAATCATTG CGTCGAAAAA TATCAATTTT GATGCCATCG AATACCATGA TTTCTTACTC
TTTGCCGGTG AAGGCGGCGT TTATGCGCGA GCGCTGGGCG ATCCCCAAGG CGAATTGACT
AATATATTAC GCTCTAGCTG GGCCCGTTCT ATTAAGGTCG ATCCTGTTAC TCAAACCCTT
TTTGTTTCCA CGTATGACGG GTTGTTCCAT ATCGAGCACG CGCAAGGGAA TTGGAATAGT
ACCTTTATCG AAGGCACAGC GGACGAACTG GAATTTGTCG CAATTGAAGA TGAAGGCGTC
GTTTGGGCAG GCACCGCCAG TCAAGAGCTT TACCGGATCG AGAACGCACA GTTCTCCCCG
CACTCGTTGA ATCCACAACA CACTTTGAGT GTACAAAAAT TTACCGCGGC CGATGGCTTA
GGGCCGGGTA ATGTTATGCC ATTTACGTTA TCTTCTGGGG TGGTTATGGG CACCAGCAAC
GGCATGATGG ACTATCAAGC AAACCGCACT CCCGCCCTTC AATACGTTAA GGACTACCCC
GCAATATTCA CCACAGAACA ACAGGACATA TTTCGGCTCT ATGAGGATGC AAATGACAGG
ATCTGGTTTC GTATAGGCCA ACACACGGGC TACATTAAAA AAGACCAGAG CGGACAATGG
CAAGTATTCG ATGCCATGTT CAAGCCGTTT TCAAGCGTTG GGTTTAACGA TTTCTTAACC
ACAGATCAAA ACACCCTGTG GTTTGCGCAA AAATCTGGGC AGCTCTACAA AGCCAACATC
AAACATTTTG AGACTGTACC CCAGCGTGCA AATCTTCATG TTCACCAAGT CAGTAATGTC
GATAACAATG CTGTTATTTA TGGCAATATC GCCAGCGAAA ATGACATGCC TGAGTTAGAT
CAAACTAATA ACTCTGTGCG CATGCACTTT GCGCTTAGTG ATAGCCATAT TTTACGCCCC
ACACGTTACC GGCACCGCCT GTTAGGCAGC AGCCACGATG CATGGAGCGA TTGGAGCCAT
GAACACCAAA AAGACTTTAC CCTGCTACCC GGCGGCGACT TTATATTTCA ACTTGAAGCA
CAAGATGCCT GGGCAAGAGA GTACAAAACC GAGCTTCCCT TTGCCGTAAA ACCTGTGTGG
TATCTCAGCA CCCTCGCTTG GTTTGCGTAT CTGCTTATAC TCCTTACATT ACTGGCCCTC
AGTGGTTGGC TCACTCAGCG CTGGCGCACA GGGAAACTAC GAGAGCACAA TGCCCTGTTA
GAAAAAACTG TTGCAGATAG AACGTTAGAA ATCAGTCACA AAGTGCAAGA ACTTGAACAA
CAACAAGTGC TTAAAGAGCG TTTTTTCAAC AATGTTTCAC ATGAATTTCG CACACCGCTC
ACACTGACCA TTGCGCCGTT ACAAGATGTG CTCAATGACC ACCCCGCCCT TGACAGCAGC
TTGGCATTAC CCGTTAAAAC CGCGCTTAGA AACGCAAAAA ACATGCTGCA ATTGGTAGGC
AACATTTTGG ACATCAACCG CTTGAATATC GGCCAATTTC CCCTGCGCGT AGCCCAATAC
AATGTCGTTG ACCTCGTACA TCGCGTTACG ACAAGATTCG AGGGATTAGC GAAACAACAG
CAGCAAACTA TCTCACTGCA CAATATTGCC GATCCTATTA GTCTGTATTT CGACTTAGAC
CAACTCGATA AATGCATGAC AAATTTGTTA TCAAACGCAC TGAAATACAG TGGTCGTGAT
AGTGAAATAG ACATCACGCT GATTAATACC GAAACACACG TAGGTATTGA GGTGCGCGAT
AATGGCCCGG GCATCGAGCC CGCTCAACAG AACAATGTGT TCGAACGTTA TTTTCAAGGA
GAGTCATCAG AGCATATAAC TCAGCCCGGC ACAGGAATAG GGTTAGCGCT AATTAAAGAG
CTGATTGAGC TGCATCATGG CACAGTCGAG TTACAAAGCG AAAAGGGTCA AGGTTGCCGT
TTTACCTTAT GGCTGCAACG CGGTCAGCAA CATTTTTCAT CAGCCCAATT AGCCGAGTCG
ATTTCTTATC CGTCTGAACC TTGTCCACCT CAAGCCAATG TTACTCACGT TTTACCCGAT
AAACTCATCA AAGATGAAAC CTGGAGCGAT ACAGAGCAGC ACGATATCAC CACAGTATTG
GTGATAGATG ATAATGCCGA ACTGCGGCAA TTCATCGCGC TTCGCCTATC CGGCTATTAT
CGTATTACGC AGGCAGAAAA TGGTGAAGAA GGCTTAGCTA AAGCGATATC AGTCCTGCCT
GATGTAATCA TCTGTGATGT GATGATGCCT AAAATGGATG GCTTAACGCT TATGCATCAC
CTGAGGGGCA ACCAACACAC CCGTAGCATC CCCATTATTC TTCTCAGTGC AAAATCTGCC
AAGCGCGATA CCGTTGAAGG ATTGCAACGT GGAGCGGACG ATTACTTGAC TAAACCGTTT
GACACCTCTG AGCTAGTAGC TCGCGTCGAC GCCCAATTAA GAGGCAGAAA GTTAATTCGT
GAAAAGCTGG AAGCTGAATT TGCTAGTGCC GATTTACCGG TTAATGACAG TCCTAATTTT
ACCGATAAAC TGCGTTCGAA CATCATTCAA CATTTAACCG ATCCAGAATT TACCGTCGAT
CAACTCGCTG AGTCGTTAGC CATGAGTCGA CGCTCTTTAA GCCGAAAATG CCAATCTGAG
TGTCAGCAAA CGATTGTTCA ATTTATGACA GAAGTACGCA TGCAAAGCGC ACTCAAACTA
TTGAATGAAA GTAAACTCAG TGTCAGTGAA ATTGCCTACG GTACGGGATA CGAAAGTTTG
TCTTACTTCT CTCGTACTTT TAAAAAGTTC TACGGAAAAG CTCCCTCTAC CATAAGTCAG
TCATAA
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| Protein sequence | MNWIKRVVFL TCGCVFLMHG VHGQQYSEVG LPISKVFGLQ EHNGSDQNWW LSQSENGFIY
VGSGTGITQF DGERWRKYVT PNSTRVRALA HWKNNHIYAG TIDDLGVYQP DDSGQLIFRS
LIADWPTETR QFGEIWSVAA SEEGVAYVSN KQVYFWDGTQ IHTVPGAIGG KHRIFSVGKG
FVYKTKDSST IHKLSITSTD STTTFLVTST PLALPKDAYV RKIFTNRQNE MTIITAQHGI
FVERNNALQR VLAPHALPPK THLYNAIQAS DGLYYLVSLY NGLLIMNESF ELVRRYQSEH
HIHMSTLYSA LEDHQGNIWL SGIPGLVKML PPQRVSEFPI GDNSTIIDKL SHINGHVVAA
GDGLFQLNAS QSVTSPPAFW PIIASKNINF DAIEYHDFLL FAGEGGVYAR ALGDPQGELT
NILRSSWARS IKVDPVTQTL FVSTYDGLFH IEHAQGNWNS TFIEGTADEL EFVAIEDEGV
VWAGTASQEL YRIENAQFSP HSLNPQHTLS VQKFTAADGL GPGNVMPFTL SSGVVMGTSN
GMMDYQANRT PALQYVKDYP AIFTTEQQDI FRLYEDANDR IWFRIGQHTG YIKKDQSGQW
QVFDAMFKPF SSVGFNDFLT TDQNTLWFAQ KSGQLYKANI KHFETVPQRA NLHVHQVSNV
DNNAVIYGNI ASENDMPELD QTNNSVRMHF ALSDSHILRP TRYRHRLLGS SHDAWSDWSH
EHQKDFTLLP GGDFIFQLEA QDAWAREYKT ELPFAVKPVW YLSTLAWFAY LLILLTLLAL
SGWLTQRWRT GKLREHNALL EKTVADRTLE ISHKVQELEQ QQVLKERFFN NVSHEFRTPL
TLTIAPLQDV LNDHPALDSS LALPVKTALR NAKNMLQLVG NILDINRLNI GQFPLRVAQY
NVVDLVHRVT TRFEGLAKQQ QQTISLHNIA DPISLYFDLD QLDKCMTNLL SNALKYSGRD
SEIDITLINT ETHVGIEVRD NGPGIEPAQQ NNVFERYFQG ESSEHITQPG TGIGLALIKE
LIELHHGTVE LQSEKGQGCR FTLWLQRGQQ HFSSAQLAES ISYPSEPCPP QANVTHVLPD
KLIKDETWSD TEQHDITTVL VIDDNAELRQ FIALRLSGYY RITQAENGEE GLAKAISVLP
DVIICDVMMP KMDGLTLMHH LRGNQHTRSI PIILLSAKSA KRDTVEGLQR GADDYLTKPF
DTSELVARVD AQLRGRKLIR EKLEAEFASA DLPVNDSPNF TDKLRSNIIQ HLTDPEFTVD
QLAESLAMSR RSLSRKCQSE CQQTIVQFMT EVRMQSALKL LNESKLSVSE IAYGTGYESL
SYFSRTFKKF YGKAPSTISQ S
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