Gene Patl_1451 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1451 
Symbol 
ID4173608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp1745240 
End bp1745869 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content45% 
IMG OID638054461 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_661028 
Protein GI109897773 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.000194499 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATTC ACGCCTATTT TATTTTTCTG ACCACGACCA TAATCGTGTG TATGTCGCCT 
GGGCCTGCGG TGATCACCAT TGCTTCTCAG GGGGCTCGCC ATGGAGCGAA AAAAGCCATA 
TTCGGTGTAA CGGGTGTGGC CAGCGCCAAC GTGGTGTATT TTTTGTTATC AGCGACGGGC 
ATTGCTTCAC TATTGGTGGC GTCAAACTTC GTTTTTTCGA TAATCAAATG GGTAGGTGTG 
GCTTACTTGG TGTACTTAGG CGTAAATGCC ATTGTGAGCA AAAGCGGCGG CTTGAGGGTT 
AATCAAAGTG CCAGTTCAAA TGCCAAAGGT ATCGCATTGT TTAGTCAGGG CTTTATCGTG 
GAGCTCGCCA ACCCCAAAGC ATTATTATAT TTTTTGGCGT TACTTCCCCA GTTTATCGAT 
ATTGAAAAAC CCATATTGTT GCAATTATTC ATTATGGGCG CGTCGTGTTT AGTGGTCGAT 
TTATTGTCGT ACACTATGTA CGCCTGCATC GGCCAAAAAC TGTCTAGCGG CGCGGTTAAA 
GCGTCAGTGG TTAATATGAT CAATAAATCT GCGGGTGGCT TTTTACTGTT TGCAGGGATT 
AAAATGGCAT CCGTCAGCTC GAATATGTAA
 
Protein sequence
MDIHAYFIFL TTTIIVCMSP GPAVITIASQ GARHGAKKAI FGVTGVASAN VVYFLLSATG 
IASLLVASNF VFSIIKWVGV AYLVYLGVNA IVSKSGGLRV NQSASSNAKG IALFSQGFIV 
ELANPKALLY FLALLPQFID IEKPILLQLF IMGASCLVVD LLSYTMYACI GQKLSSGAVK 
ASVVNMINKS AGGFLLFAGI KMASVSSNM